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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTATGGCAGGTTCTGCTCCCGAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaagagtgataaccgcctgcactgattaccctcgccttttcattattttgtgatgtgttttcacttcagttgctgtgaatccacttgaaatgattcgtgatgaagggatctctcatcaacatttatcttgtttcttctcag

Basic information

species Physcomitrella patens
transcript PP1S31_150V6.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208388678|gb|DC941505.1|DC941505
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100388568|gb|BY952170.1|BY952170
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100405929|gb|BY991454.1|BY991454
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|67718483|gb|BJ968742.1|BJ968742
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100362821|gb|BY947545.1|BY947545
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|67718047|gb|BJ968306.1|BJ968306
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208375488|gb|DC937003.1|DC937003
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208346400|gb|DC905305.1|DC905305
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208400626|gb|DC904602.1|DC904602
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100357901|gb|BY946631.1|BY946631
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGGCTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|67718174|gb|BJ968433.1|BJ968433
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100373426|gb|BY949320.1|BY949320
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208359138|gb|DC934641.1|DC934641
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCATGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208392366|gb|DC907885.1|DC907885
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100394940|gb|BY990001.1|BY990001
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208388645|gb|DC941486.1|DC941486
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208353687|gb|DC938754.1|DC938754
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100393761|gb|BY953501.1|BY953501
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208395856|gb|DC911865.1|DC911865
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100401889|gb|BY954761.1|BY954761
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100403374|gb|BY991171.1|BY991171
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208397355|gb|DC908245.1|DC908245
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|162198132|gb|FC373082.1|FC373082
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100429913|gb|BY978152.1|BY978152
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|67718173|gb|BJ968432.1|BJ968432
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|162218220|gb|FC395018.1|FC395018
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100403879|gb|BY955147.1|BY955147
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100447413|gb|CJ971712.1|CJ971712
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|162221100|gb|FC397741.1|FC397741
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100367028|gb|BY948332.1|BY948332
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100396603|gb|BY990207.1|BY990207
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|208350849|gb|DC913453.1|DC913453
EST:     GAAGGTTCCCAGTTTGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|67507940|gb|BJ940815.1|BJ940815
EST:     AAGGTTCCCAGCTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: AAGGTTCCCAG-TTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
EST: gi|100386440|gb|BY951236.1|BY951236
EST:     GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACAT                         CTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA
genomic: GAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaaga ... ttcttctcagCTTGTCGGCCGAGGGCGAGGACTTCATTTCGACGTGGGAGGAGGTTCACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGTATGGCAGGTTCTGCTCCCGAAGGTTCCCAGTTCGATGCACGCCAATATGACGCCAAGATGGAGAACATgtaagaaagagtgataaccgcctgcactgattaccctcgccttttcattattttgtgatgtgttttcacttcagttgctgtgaatccacttgaaatgattcgtgatgaagggatctctcatcaacatttatcttgtttcttctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA