1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTGTCACATTTCAAGCTGTTGAAGAGGTTGGGGTGCGGCGATATCGGGAGCGTGTACCTCGCTGAGCTTCGTGGCAGCCACAGTCACTTTGCAATGAAGgtaatggttcggtttgcaagttacggttgtggaagatacggagtcgtgacattcgcgacgtcggtgcttggcatccgagatggtgtgcattgtgccggtg...
species | Physcomitrella patens |
transcript | PP1S316_69V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTGGCAGCCACAGTCACTTTGCAATGAAG GTGATGGACAAAGGATCGCTTGCGAGCCGCAAAAAGCTTTTGCGAGCTCAGEST: gi|162279607|gb|FC455359.1|FC455359
genomic: CGTGGCAGCCACAGTCACTTTGCAATGAAGgtaatggttc ... ttgaatgtagGTGATGGACAAAGGATCGCTTGCGAGCCGCAAAAAGCTTTTGCGAGCTCAG
EST: GCGTGTACCTCGCTGAGCTTCGTGGCAGCCACAGTCACTTTGCAATGAAG GTGATGGACAAAGGATCGCTTGCGAGCCGCAAAAAGCTTTTGCGAGCTCAGEST: gi|162202777|gb|FC379551.1|FC379551
genomic: GCGTGTACCTCGCTGAGCTTCGTGGCAGCCACAGTCACTTTGCAATGAAGgtaatggttc ... ttgaatgtagGTGATGGACAAAGGATCGCTTGCGAGCCGCAAAAAGCTTTTGCGAGCTCAG
EST: GCGTGTACCTCGCTGAGCTTCGTGGCAGCCACAGTCACTTTGCAATGAAG GTGATGGACAAAGGATCGCTTGCGAGCCGCAAAAAGCTTTTGCGAGCTCAG
genomic: GCGTGTACCTCGCTGAGCTTCGTGGCAGCCACAGTCACTTTGCAATGAAGgtaatggttc ... ttgaatgtagGTGATGGACAAAGGATCGCTTGCGAGCCGCAAAAAGCTTTTGCGAGCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTCACATTTCAAGCTGTTGAAGAGGTTGGGGTGCGGCGATATCGGGAGCGTGTACCTCGCTGAGCTTCGTGGCAGCCACAGTCACTTTGCAATGAAGgtaatggttcggtttgcaagttacggttgtggaagatacggagtcgtgacattcgcgacgtcggtgcttggcatccgagatggtgtgcattgtgccggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT