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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAAGGAATTGGAGACGGGACTGTTAGTTATGGCATGGACGACGGTGACGATGTGTTAATGCGCTCTTGGACCGGAACCATAATTGGACCGAATCACgtgagtttttgagacaatggaattatctttacgattagtagtctgtcggttcagcgttgaatattcacaattttgttgaacaatagcctttttttcagtt...

Basic information

species Physcomitrella patens
transcript PP1S311_60V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S311_60V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA03G35790.1 (Glycine max), 5'ss of exon 2
TGAGAAAGGAATTGGAGACGGGACTGTTAGTTATGGCATGGACGACGGTGACGATGTGTTAATGCGCTCTTGGACCGGAACCATAATTGGACCGAATCACgtgagtttttgag-acaatggaattatctttacgattagtagtctgtcggttcagcgttgaatattcacaattttgtt-gaacaatagcctttttttcagtt
 || |||||||| ||||| || || ||||| ||||| ||||| || ||||||||  | |  |||||||||||||| |||||||| ||||| ||  || | || | | |||    |  |  |  ||   |||    ||  ||     |  || ||  | | |||   |   ||||| || |||| |  |  ||||  |   | 
AGAAAAAGGAATCGGAGATGGAACAGTTAGCTATGGAATGGATGATGGTGACGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGCCCCTATAATgtaaatatttatctattactgccttgattttttttttc-tatcaaatatgtgca-tgctaaatgagctgtattttatttgaaccagcgaattttcatgtatc

upper sequence: PP1S311_60V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA19G38450.1 (Glycine max), 5'ss of exon 2
TGAGAAAGGAATTGGAGACGGGACTGTTAGTTATGGCATGGACGACGGTGACGATGTGTTAATGCGCTCTTGGACCGGAACCATAATTGGACCGAATCACgtgagtttttga--gacaatggaattatctttacgattagtagtctgtcggttcagcgttgaatattcacaattttgttg--aacaatagcctttttttcagtt-
 || |||||||| ||||| || || ||||||||||| ||||| || ||||| ||  | |  |||||||||||||| |||||||| ||||| ||  || | || | | |||     ||| ||   | || |||     |   | | |||   |     ||| |||   |   ||||| ||   |  | |    |||  |  ||   
AGAAAAAGGAATAGGAGATGGCACAGTTAGTTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGTCCCTATAATgtaaatatttatctaacactgccttgatttttttttcttcaaatatgtgcat-----gttaaatgagctgtattttatttgtactagtgaattttcatgtagcaa

upper sequence: PP1S311_60V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
TGAGAAAGGAATTGGAGACGGGACTGTTAGTTATGGCATGGACGACGGTGACGATGTGTTAATGCGCTCTTGGACCGGAACCATAATTGGACCGAATCACgtgagtttttgagacaatggaattatctttacgattagtagtctgtcggttcagcgttgaatattcacaattttgttgaacaatagcctttttttcagtt-----
|||||||||||||||||| ||||| || |||||||| ||||| || | ||| ||| | || ||||  |||||||| || |||||  |||| ||  || | || ||||||        |  |  ||||| | | ||   | || |  |  || |  | | |||||  |   |    ||||| ||       ||||| | |      
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttc-tcaatctatctcttc-atcttttgtttaac--ttaaatgat-aatatctatggtagatttgaataaagatgcattttttaatgctaaa