1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattgttgcgctgattttattcgaggatttctgtattctcgatttgattagttgttagtgccctcatgcggattcgaatcttgttttcttagatctctatggcgctacctttcaatgttataaatgtagggaggtaaagttattagggtttagtgaggagactttgagtctaatatcctgcacttgcaattgtag
species | Physcomitrella patens |
transcript | PP1S311_33V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|67698486|gb|BJ958719.1|BJ958719
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: GTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|208350926|gb|DC910473.1|DC910473
genomic: GTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|162279665|gb|FC455898.1|FC455898
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|18374415|gb|BJ205993.1|BJ205993
genomic: CAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|208394580|gb|DC953619.1|DC953619
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: GGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|162236276|gb|FC411200.1|FC411200
genomic: GGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGTT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|19785812|gb|BQ040399.1|BQ040399
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|18373396|gb|BJ204974.1|BJ204974
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|67575041|gb|BJ947865.1|BJ947865
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|208359876|gb|DC934877.1|DC934877
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|208377690|gb|DC932226.1|DC932226
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|162239498|gb|FC417963.1|FC417963
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|18373564|gb|BJ205142.1|BJ205142
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|162271070|gb|FC446097.1|FC446097
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|67571348|gb|BJ944172.1|BJ944172
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|18367978|gb|BJ200062.1|BJ200062
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|162271071|gb|FC446098.1|FC446098
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|18355513|gb|BJ187572.1|BJ187572
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGGAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|162235066|gb|FC411201.1|FC411201
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|18342104|gb|BJ174139.1|BJ174139
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|67694668|gb|BJ954901.1|BJ954901
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: GTGTCAGNAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|208386094|gb|DC949005.1|DC949005
genomic: GTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCANTAC-GGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|18371929|gb|BJ203531.1|BJ203531
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|67698381|gb|BJ958614.1|BJ958614
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: GTCAGAAG-AAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCCAGCEST: gi|162279666|gb|FC455899.1|FC455899
genomic: GTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGA-CCAGC
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|67574954|gb|BJ947778.1|BJ947778
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCTEST: gi|18352184|gb|BJ184238.1|BJ184238
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
EST: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
genomic: CCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattg ... gcaattgtagTCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGGTCAGTGGTGACCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCTgtgagtattgttgcgctgattttattcgaggatttctgtattctcgatttgattagttgttagtgccctcatgcggattcgaatcttgttttcttagatctctatggcgctacctttcaatgttataaatgtagggaggtaaagttattagggtttagtgaggagactttgagtctaatatcctgcacttgcaattgtag
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT