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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAATCTGTAGGGAAATGGAAGAGAAGAAGGCGAAAGCACAGGATTCATATGCCCAGCCCGATGATTTAATCGATTTCTATCACCTGAAGCGAACAAAGgtataccttgaaacacccacgatgaattttgagtcctttagtggactcactgcatcaaaccgttgaagcaatgagctttcattagagctcgtagcgggat...

Basic information

species Physcomitrella patens
transcript PP1S309_15V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100436031|gb|BY979345.1|BY979345
EST:     ATGCCCAGCCCGATGATTTAATCGATTTCTATCACCTGAAGCGAACAAAG                         GGCATGAGCCAAATGGAGCTGGAGGATGAAGTGCAAGATGACCTCAAAAGA
genomic: ATGCCCAGCCCGATGATTTAATCGATTTCTATCACCTGAAGCGAACAAAGgtataccttg ... atctgagcagGGCATGAGCCAAATGGAGCTGGAGGATGAAGTGCAAGATGACCTCAAAAGA
EST: gi|162263081|gb|FC438837.1|FC438837
EST:     ATGCCCAGCCCGATGATTTAATCGATTTCTATCACCTGAAGCGAACAAAG                         GGCATGAGCCAAATGGAGCTGGAGGATGAAGTGCAAGATGACCTCAAAAGA
genomic: ATGCCCAGCCCGATGATTTAATCGATTTCTATCACCTGAAGCGAACAAAGgtataccttg ... atctgagcagGGCATGAGCCAAATGGAGCTGGAGGATGAAGTGCAAGATGACCTCAAAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAAATCTGTAGGGAAATGGAAGAGAAGAAGGCGAAAGCACAGGATTCATATGCCCAGCCCGATGATTTAATCGATTTCTATCACCTGAAGCGAACAAAGgtataccttgaaacacccacgatgaattttgagtcctttagtggactcactgcatcaaaccgttgaagcaatgagctttcattagagctcgtagcgggat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC