1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGGGAGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATGgtatgttggacctcttaggctatctttttttttcagcatctcttacatttctttcatagctttctgagaccgtgagatttgattttcctggaaaataatcgcgaacttttggtgattttgttttttgaatatttcttgcag
species | Physcomitrella patens |
transcript | PP1S307_63V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATG GCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTTEST: gi|67570647|gb|BJ943471.1|BJ943471
genomic: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATGgtatgttgga ... tttcttgcagGCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTT
EST: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATG GCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTTEST: gi|100409456|gb|BY992020.1|BY992020
genomic: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATGgtatgttgga ... tttcttgcagGCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTT
EST: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATG GCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTTEST: gi|208397125|gb|DC908139.1|DC908139
genomic: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATGgtatgttgga ... tttcttgcagGCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTT
EST: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATG GCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTTEST: gi|162185509|gb|FC361233.1|FC361233
genomic: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATGgtatgttgga ... tttcttgcagGCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTT
EST: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATG GCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTTEST: gi|100413175|gb|BY992624.1|BY992624
genomic: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATGgtatgttgga ... tttcttgcagGCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTT
EST: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATG GCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTT
genomic: AGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATGgtatgttgga ... tttcttgcagGCCTCCTTTATTGGTGCAATGGCAATAGCAGACCTTGTCAAAAGTACTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGAGTTGTTCAAGCCCGATGCGATGGAAGAGAAAGGCGAGCGTGCTAGGATGgtatgttggacctcttaggctatctttttttttcagcatctcttacatttctttcatagctttctgagaccgtgagatttgattttcctggaaaataatcgcgaacttttggtgattttgttttttgaatatttcttgcag
- - - - - - - - - - - GATGGA
- - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG