1 5' 3' | 2 5' 3' | 3 5' 3' |
ACACTGGTGTCTTAGCTGCTGTGAGTGTGTTCCATGAGATGCAGCAGTTTGGGTTGAAACCAAATGTTGTGACATTCTCTGCTATACTGAACGCCTGCAGgtgagcactgtcagatcagatgtgtacgctatcattcgaatttgtagcttggattacatggatgtgtgtcttgaatctttgtgattgacttggatcaattggatgcag
species | Physcomitrella patens |
transcript | PP1S307_58V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTTGAAACCAAATGTTGTGACATTCTCTGCTATACTGAACGCCTGCAG TCGGTGTGCTTCGCTTCAAGAAGCATCTGTACTGCTGGAACAGATGCGCTTEST: gi|100389473|gb|BY988951.1|BY988951
genomic: GGGTTGAAACCAAATGTTGTGACATTCTCTGCTATACTGAACGCCTGCAGgtgagcactg ... ttggatgcagTCGGTGTGCTTCGCTTCAAGAAGCATCTGTACTGCTGGAACAGATGCGCTT
EST: GGGTTGAAACCAAATGTTGTGACATTCTCTGCTATACTGAACGCCTGCAG TCGGTGTGCTTCGCTTCAAGAAGCATCTGTACTGCTGGAACAGATGCGCTTEST: gi|162256632|gb|FC433150.1|FC433150
genomic: GGGTTGAAACCAAATGTTGTGACATTCTCTGCTATACTGAACGCCTGCAGgtgagcactg ... ttggatgcagTCGGTGTGCTTCGCTTCAAGAAGCATCTGTACTGCTGGAACAGATGCGCTT
EST: GGGTTGAAACCAAATGTTGCGACATTCTCTGCTATACTGAACGCCTGCAG TCGGTGTGCTTCGCTTCAAGAAGCATCTGTACTGCTGGAACAGATGCEST: gi|162214317|gb|FC390036.1|FC390036
genomic: GGGTTGAAACCAAATGTTGTGACATTCTCTGCTATACTGAACGCCTGCAGgtgagcactg ... ttggatgcagTCGGTGTGCTTCGCTTCAAGAAGCATCTGTACTGCTGGAACAGATGC
EST: GGGTTGAAACCAAATGTTGTGACATTCTCTGCTATACTGAACGCCTGCAG TCGGTGTGCTTCGCTTCAAGAAGCATCTGTACTGCTGGAACAGATGCGCTT
genomic: GGGTTGAAACCAAATGTTGTGACATTCTCTGCTATACTGAACGCCTGCAGgtgagcactg ... ttggatgcagTCGGTGTGCTTCGCTTCAAGAAGCATCTGTACTGCTGGAACAGATGCGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACTGGTGTCTTAGCTGCTGTGAGTGTGTTCCATGAGATGCAGCAGTTTGGGTTGAAACCAAATGTTGTGACATTCTCTGCTATACTGAACGCCTGCAGgtgagcactgtcagatcagatgtgtacgctatcattcgaatttgtagcttggattacatggatgtgtgtcttgaatctttgtgattgacttggatcaattggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG