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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTACACTAAGCTTGACAGTGTCGGTACTGAAGATTACTTCTGTCGCTTTGAATACAAGGCTTCTACTGGCGGATTCACTCCTGATCGAGTGGCTGTgtacgtcatttttcactctacatgtttcttttccttatatacgtttggtgaagtaacaaggaactcatctctcggcggtcgcatagtcgtaacgctacat...

Basic information

species Physcomitrella patens
transcript PP1S307_14V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S307_14V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT4G22140.1 (Arabidopsis thaliana), 5'ss of exon 2
AAAATTACACTAAGCTTGACAGTGTCGGTACTGAAGATTACTTCTGTCGCTTTGAATACAAGGCTTCTACTGGCGGATTCACTCCTGATCGAGTGGCTGTgtacgtcatttttcactctacatgtttcttttccttatatacgtttggtgaagtaacaaggaactcatctctcggcggtcgcatagtcgtaacgctacat
|||| ||||| | |||||| |  || ||  | || ||||| |  ||| | || || ||||||||| ||||||||| ||| || ||||||||||| |||||||| ||   |    | |   ||  |      | |   |     ||   || | |  | | ||  |  | |||  |  || |  |  |  |    ||  | 
AAAACTACACGAGGCTTGAAAACGTTGGGGCAGAGGATTATTATTGTAGATTCGAGTACAAGGCTGCTACTGGCGCATTTACCCCTGATCGAGTTGCTGTgtaagtagataaatagtaatcagatcagaactacgccttcttattacctggaatttccatgattttttatct--gttgtgggttgttgttggttctgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162178126|gb|FC354428.1|FC354428
EST:     TTTGAATACAAGGCTTCTACTGGCGGATTCACTCCTGATCGAGTGGCTGT                         GTATTGTAAATGTGAGATGCCTTATAATCCAGATGATTTGATGGTTCAATG
genomic: TTTGAATACAAGGCTTCTACTGGCGGATTCACTCCTGATCGAGTGGCTGTgtacgtcatt ... ttctgtatagGTATTGTAAATGTGAGATGCCTTATAATCCAGATGATTTGATGGTTCAATG