1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAAGTTCTTGAATGTTGACACAGAGGGCTCGATTGCTTATGGTCAATTTCGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACGgtatatttctttcctagtgccgatttgaatacctaagatattcggtctagtttgtcatttggttttttgattttttaatcattggtgcagttatataaggatgggtttttatagtgctgatggcctattgttggtgtgaag
species | Physcomitrella patens |
transcript | PP1S2_777V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACG GATGGTGTGGTTCGAAGCAGCGACTGTAGTACCTATGGCTCCTCCTGTTGAEST: gi|162162891|gb|FC339258.1|FC339258
genomic: CGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACGgtatatttct ... tggtgtgaagGATGGTGTGGTTCGAAGCAGCGACTGTAGTACCTATGGCTCCTCCTGTTGA
EST: CGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACG GATGGTGTGGTTCGAAGCAGCGACTGTAGTACCTATGGCTCCTCCTGTTGAEST: gi|100448647|gb|CJ972946.1|CJ972946
genomic: CGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACGgtatatttct ... tggtgtgaagGATGGTGTGGTTCGAAGCAGCGACTGTAGTACCTATGGCTCCTCCTGTTGA
EST: CGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACG GATGGTGTGGTTCGAAGCAGCGACTGTAGTACCTATGGCTCCTCCTGTTGAEST: gi|162151261|gb|FC327715.1|FC327715
genomic: CGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACGgtatatttct ... tggtgtgaagGATGGTGTGGTTCGAAGCAGCGACTGTAGTACCTATGGCTCCTCCTGTTGA
EST: CGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACG GATGGTGTGGTTCGAAGCAGCGACTGTAGTACCTATGGCTCCTCCTGTTGA
genomic: CGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACGgtatatttct ... tggtgtgaagGATGGTGTGGTTCGAAGCAGCGACTGTAGTACCTATGGCTCCTCCTGTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGTTCTTGAATGTTGACACAGAGGGCTCGATTGCTTATGGTCAATTTCGGAACTTTATGCTTTTGCTTCCACCAGAGCGTCTTGGAGATGATCCACGgtatatttctttcctagtgccgatttgaatacctaagatattcggtctagtttgtcatttggttttttgattttttaatcattggtgcagttatataaggatgggtttttatagtgctgatggcctattgttggtgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG