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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt...

Basic information

species Physcomitrella patens
transcript PP1S2_16V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os02g01560.1 (Oryza sativa), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaac-gttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt----
||  | ||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||| | ||||| || |||||||||||  |||  |   |||| ||| |||    ||  | | | |||  |     ||| |     || || |  | ||  | |   | |  |     |      
GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTTgtaagtttgtcattct-tgtttacacttaactacacatgcttgaagcttatcttttttttttctgttacctgatagcttatatttctaattaccttttaccatag

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os05g30530.1 (Oryza sativa), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgc-tagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt---
||  | ||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||| | ||||| || |||||||||      | | ||    |     | |   || |    |||| |  |    | | ||       | |  ||    | ||||  |     |    |||   
GCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCCCCCAGCCATTGGATGCTTGACAAGCTTGGTGGAGCATTTgtaagtacattgtatagccgcaagttatatcacgcagttcaaatgcattctgtataatgctaatgtagtgtttgg----caaatgggaaagggaaatgatttcc

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttt--tatactcaacgtt-caatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctca-gcgaatt----
||  | || |||||||||||| | ||||||||||||||||||| |||||||||||| |||||| | || || || ||||| |||||      || || |  | | ||  |  |  |    | |||    |      ||    ||   |     |  |||||     | |  |   | |  ||    
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G469061_T01 (Zea mays), 5'ss of exon 3
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgctt-ttatactca-----acgttcaa---tcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||| | || ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | ||||| || |||||||||   |||| | |      ||| | |     ||   |||   || | ||   ||   | |   | |  |  | | ||  | | | || | | |  |  ||     
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTTgtaagtaa-acatgtcggggaccataattaggggtacccccaagactcctaatctcagctggtaaccccc--atcagcacaaagctgcaaaggcctga-tgggc-----

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G158584_T02 (Zea mays), 5'ss of exon 5
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtc--tcagcgaatt
||| | || ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | || || || |||||||||   | || ||   |   |     || | ||||| || ||    | | ||||| ||| |   |    |   |||   | || ||   || | | |  
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaaaatattttctagctttggtacctacaatcttc-tgtacttccccatttgtctaatgcttcaggttgttcttttttctgtagatctgtgtac-

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G176641_T01 (Zea mays), 5'ss of exon 4
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtc--tcagcgaatt
||| | || ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | || || || |||||||||     || ||   |   |     || | ||||| || ||    | | ||||| ||| |   |    |   |||   | || ||   || | | |  
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaatattttctagctttggtacctacaatcttc-tgtacttccccatttgtctaatgcttcaggttgttcttttttctgtagatctgtgtac-

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G125271_T01 (Zea mays), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||| | || ||||||||||||||||||||||||||||| |||| ||| |||||||| |||||| | || || || |||||||||     |  ||   | ||       |  |   |  |  | ||      ||||| ||| | | | || |   || |    |   | |         
GCTAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTGGACAAGCTTGGCGGAGCTTTTgtaagtaaagaaattt---tgtagctctgtcactttttttttctactc-----catttgtctaa-tgtttctg---tttggtcttttatgtag-------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G035017_T01 (Zea mays), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||| | || ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | || || || |||||||||     |  ||   |   |     || | ||||| || ||    |   | ||| ||||| | | |||||  || || | |   | || |      
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaaaattttctagctttggtacctacaatcttc-tgtacttcttcttttgtctga-tgtttcagg--ttggactttt--tttctgtag---

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G542753_T01 (Zea mays), 5'ss of exon 6
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||| | || | ||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | || || || |||||||||     || ||   |   |     || | ||||| || ||    | | ||||| ||||| |   |||||  || |  | |   | || |      
GCTAGGGGATCGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaatattttctagctttggtacctacaatcttc-tgtacttccccatttgtctga-tgcttcagg--ttggtctttttttttctgtag---

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G301096_T01 (Zea mays), 5'ss of exon 3
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||| | || ||||||||||| |||||||||||||||||||||| ||| ||||||||  ||||| | ||  | || |||||||||     || ||   |   |     || | ||||| || ||    | | ||||| ||||| |   |||||        | |   | || |      
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCAACAAGCTTGGCAGAGCTTTTgtaagtaaacaatattttctagctttggtacctacaatcttc-tgtacttccccatttgtctga-tgcttcagg----ttggtctttttttctgtag---

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G060986_T01 (Zea mays), 5'ss of exon 6
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||| | || ||||||||||| |||||||||||||||| ||||| ||| |||||||| || ||| | ||  | || ||||| |||     || ||   |   |     || | ||||| ||                                                          
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGTGCCCAAGCATTGGATGCTCGATAAGCTTGGCAGAGCTTTTgtgagtaaacaatattttctagctttggtacctacaatcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G159228_T01 (Zea mays), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||| | || ||||||||||| |||||||| |||| ||| |||| ||| |||||||| |||||| | || || || |||||||||     || ||   |   |     || | ||||| || ||    | | ||||| ||||| |   |||||        | |   | || |      
GCTAGGGGATTGAAGAAGCACTTGAAGAGCCTCAGTGCTCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaatattttctagctttggtacctacaatcttc-tgtacttccccatttgtctga-tgcttcagg----ttggtctttttttctgtag---

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G05370.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||  | || ||||||||||||||||||||||| ||||| || | ||| ||||||||||||||  |||||||||| |||||||||     |  ||||||| ||  |     || ||  ||  | |  ||  |||||||  |    |   | |  ||     | ||    | ||      
GCGAGAGGATTGAAGAAGCATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagt---gaaagttgcttt-atctt-----tttaacagtttt-caggtgtgcatttcattttaaaagactgatatatatttttcctgtttag------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA14G06170.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta-catcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||| | ||  | |||||||||||||| ||||||||||| || | ||| ||||||||||||||  |||||||||| |||||||||   |   |  |  |||| ||  ||   || ||  ||  |  |   | | | |  | |||   | |       |  |  |                
GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaaatttaatcattttgtaaccagttttgaagggtattattttgaag-actgatgtgaacctttttcatcctgtatag----------------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G43080.2 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgact-atctcagggattcgaatgtcagtctcagcgaatt
||| | || |||||||||||| | |||||||||||||| || | ||| ||||||||||||||  |||||||||| |||||||||   || |    | ||  |       || || |  | | |   |||   ||||    |||| || | |   |||   ||        |||      
GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaactttcatcattcttg------gtccagttttgaagt--gtat-tattttaaagactgatgtgaaacattttcatcctg--tacag------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA03G06440.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||  | || |||||||| || ||||||||||||||||| || |  |||||||||||||||||| | ||||| ||||||||| ||     | ||  |  || |     |  || | | |||||  |  |  | | || ||     | ||||    || |  || | || |         
GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGGGCCTTTgtatgtacagta-ctcacagttgttgatgatatt-atttgtcatttttatttgtaattttcgtttgaactcat---tttgcctggctgtgtag-------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA16G23730.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt
||  | || || ||||||||| |||||||||| ||||| || | ||| ||||||||||||||  |||||||||| |||||||||   | |  ||  || | |  | ||     | |  |||    || | |||||||   || |       ||| |    | ||    | ||      
GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtg--aaaatttctttatcttttgaaa----agttttca----aggatgcatttcaaagatt--tatgtggacttttttttcttgtttag------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA01G31270.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcg-tcatgctagtacgcatttctctgactatctcagggattcgaatg-tcagtctcagcgaatt
||  | || || ||||| ||  |||||||||||||||| || |  || ||||||||||||||| | ||||||||||||||| ||     | ||  |  || |     |  ||   |   |||   |  |  | | || ||     | |||| | | ||   ||  | | ||| |      
GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTTgtatgtacagta-ctcacaattgtcgatgatattattttactcaaatttatttgtaattttcatttgaactcatgtactcatttggcctggctctgtag---

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt-----------
||| | || |||||||| |||||||||||||||||||| || | ||| ||||||||||||||| | || ||||| |||||||||   |          | |  |   | |    || |   | |   || ||  || ||    |||||    |    |  | |   | ||    | ||           
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtca-atgaaaaataataaaccatgaagcctgattggttttcc--tatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv13s0067g01820.t01 (Vitis vinifera), 5'ss of exon 1
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtc-tcagcgaatt-------
      || ||||||||||||||||||||||||||||| || | ||| |||||||| |||||| | || ||||| |||||||||   | ||||     | || |  |   ||| |||| |    |   || |  || ||| ||   |  |   |||      |||  | | | |  |||       
-----AGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaaaatctgttcctgattcatatttttctatcgactcattt-cacacccttatctcacatccaaaatcattgatggctcatccataatcctatttgtatag

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgct---tttatactcaacgttcaatcgtcatgctagtacgcatttctctgactat-ctcagggattcgaatgtcagtctcagcgaatt
|| || || || ||||| |||||||||||||| ||||| || | ||| ||||||||||||||  | || ||||| |||||||||  ||    || ||   | | |   ||    | |||  |  |       ||  |||  ||  || | ||      |   |   || |||  |  |    
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagcttttctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67716905|gb|BJ967164.1|BJ967164
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|208391390|gb|DC933567.1|DC933567
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|208389935|gb|DC937766.1|DC937766
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|67719943|gb|BJ970202.1|BJ970202
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|18361523|gb|BJ193589.1|BJ193589
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|162192347|gb|FC371642.1|FC371642
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|208382233|gb|DC914852.1|DC914852
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|162279720|gb|FC455628.1|FC455628
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|18365612|gb|BJ197689.1|BJ197689
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|67573065|gb|BJ945889.1|BJ945889
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|18361547|gb|BJ193613.1|BJ193613
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|162190584|gb|FC366222.1|FC366222
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|67572408|gb|BJ945232.1|BJ945232
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|67719989|gb|BJ970248.1|BJ970248
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
EST: gi|208400408|gb|DC908635.1|DC908635
EST:     GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT                         GCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG
genomic: GGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 35

GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagtttta ... atattatcagGCCCCCAAGCCATCTCCTGGACCACACAAGGAGAGAGAATGCTTGCCTCTGGTGGTTATGCTGAGGAATAGGCTGAAGTATGCGTTGACCTACCGTGAAG




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