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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGCAGAGGAAGGTGTTGAAGGCTGTCAATGGCGTCCGCGCCATGGCCTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgacaatggcgcagcgactaagtagagcatagcttttttaggaaccgcttgctgtaccacatgctcatttacttcaatttgtattttgtag

Basic information

species Physcomitrella patens
transcript PP1S29_256V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67718262|gb|BJ968521.1|BJ968521
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGATTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|19777824|gb|BQ039232.1|BQ039232
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|162169758|gb|FC345295.1|FC345295
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|162176349|gb|FC353534.1|FC353534
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|100384688|gb|BY950678.1|BY950678
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|100403476|gb|BY991219.1|BY991219
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|18350765|gb|BJ182816.1|BJ182816
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|18325596|gb|BJ157593.1|BJ157593
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|100429370|gb|BY978077.1|BY978077
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|162167232|gb|FC342797.1|FC342797
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|162171618|gb|FC347559.1|FC347559
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|67718833|gb|BJ969092.1|BJ969092
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
EST: gi|162241271|gb|FC416902.1|FC416902
EST:     CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAG                         GGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG
genomic: CTCTGCCAACGGTGTCCCAGCCCCTTCTGGCCTTCCCATTGATCTTCGAGgtacctgaca ... tattttgtagGGAAAAGAGCGTTTATTGCCGGTGTGGCGGATGACCAAGGTTTTGGCTGGG