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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTACACAAAGTTGGAAAGTGTTGGTGCAGAAGACTATTTCTGCCGGTTCGAATATAAAGCATCAACTGGCGGGTTCACTCCTGATCGAGTTGCTGTgtaagcaattccttttcgttcatttgagtctgttgaaagtgggaatcacgtccgttttcttttcttaagagttcctactcacaacctaaacctacctcta...

Basic information

species Physcomitrella patens
transcript PP1S298_65V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S298_65V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT4G04260.1 (Arabidopsis thaliana), 5'ss of exon 1
AAAATTACACAAAGTTGGAAAGTGTTGGTGCAGAAGACTATTTCTGCCGGTTCGAATATAAAGCATCAACTGGCGGGTTCACTCCTGATCGAGTTGCTGTgtaagcaattccttttcgttcatttgagtctgttgaaagtgggaatcacgtccgttttcttttcttaagagttcctactcacaacctaaacctacctcta
|||| ||||| | | | |||| |||||| |  ||||| |||| |||    || || ||||||||  | ||||||| ||| |||||||||||||||||||||| ||    | | |     | |     | || ||     ||    | || |    |||   ||  |     ||   | |   |   ||||          
AAAACTACACGAGGCTTGAAAATGTTGGAGTGGAAGATTATTACTGTATATTTGACTATAAAGCTGCTACTGGCGCGTTTACTCCTGATCGAGTTGCTGTgtgagtggatacatagtaatgaaacatgcctttttctcctgtagtttacatagagttttgatttatcttcttttggattttga---taaag---------