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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact...

Basic information

species Physcomitrella patens
transcript PP1S28_10V6.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 2
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact-
 ||||||| |||||     ||||  | ||||| ||||||||||||||||| |||||||| |||||| | || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  | | || |           |||||  |     |||      |||   |   ||   |  
CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactt-tcatatta---------atattctggttctcattcctgttcactctggaactttcag

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv00s2761g00010.t01 (Vitis vinifera), 5'ss of exon 1
--GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact
   ||| ||| | |||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  |      |  |  |          |   ||||||      |  |   || |       
AGCAAATGGAGCCGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcccgtccactc--tggaactttcag-------

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 5'ss of exon 2
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact-
 ||||||| |||||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| ||| |||||||   ||  | |   | |   ||    |  |||| |  |  | | || |           |||||  |     |||      |||   |   ||   |  
CAAAAGGAGCTGATGCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCTGTGGgtatgcacttggactatagttatttccattgatacctttactt-tcatatta---------atattctggttctcattcctgttcactctggaactttcag

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv09s0054g00210.t01 (Vitis vinifera), 5'ss of exon 3
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact
 ||||||| |||||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  |      |  |  |          |    || ||      |  |   || |       
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcctattaatattctggttctcattcctgttcactc--tggaactttcag-------

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv09s0054g00190.t01 (Vitis vinifera), 5'ss of exon 2
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact
 ||| ||| | ||      ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  |      |  |  |          |    |||||      |  |   || |       
CAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccactc--tggaactttcag-------

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 1
--GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact
   ||| ||| | ||      ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  |      |  |  |          |    |||||      |  |   || |       
AGCAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccactc--tggaactttcag-------

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 3
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact
 ||||||| |||||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  |      |  |  |          |    || ||        | |    |  | |   
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcagtatcaatgc

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv00s2416g00010.t01 (Vitis vinifera), 5'ss of exon 1
--GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact
   ||| ||| | |||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  |      |  |  |          |    |||||      |  |   || |       
AGCAAATGGAGCCGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccactc--tggaactttcag-------

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv09s0054g00060.t01 (Vitis vinifera), 5'ss of exon 2
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact-
 ||||||| |||||     ||||    ||||| ||||||||||||||||| || ||||| ||||||   || ||| | ||||| ||||| |||||||||||     | ||| ||| |||| ||  ||   | | |  ||   ||   |  | |  |   |||||  |     |||      |||   |   ||   |  
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTATGTTGATCCAGAGGTTAAACTTCTATTTGTTATTCGTATCCGTGGgta----tgcgca-cttggactatg-gttatttcccttgatacctttact--ttcatattaatattctggttctcattcctgttcactctggaactttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7147733|gb|AW509598.1|AW509598
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|19784792|gb|BQ040234.1|BQ040234
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162213471|gb|FC389148.1|FC389148
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162202534|gb|FC380049.1|FC380049
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162272020|gb|FC448438.1|FC448438
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162261690|gb|FC438123.1|FC438123
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18351768|gb|BJ183820.1|BJ183820
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67720481|gb|BJ970740.1|BJ970740
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67727087|gb|BJ977346.1|BJ977346
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162261689|gb|FC438122.1|FC438122
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|6167223|gb|AW145487.1|AW145487
EST:     GTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: GTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18340297|gb|BJ172325.1|BJ172325
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162278231|gb|FC454570.1|FC454570
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208388632|gb|DC953422.1|DC953422
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67718670|gb|BJ968929.1|BJ968929
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18327583|gb|BJ159586.1|BJ159586
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATACACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208362232|gb|DC939656.1|DC939656
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGGCATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67704547|gb|BJ964780.1|BJ964780
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67719402|gb|BJ969661.1|BJ969661
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCATAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67717180|gb|BJ967439.1|BJ967439
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18375138|gb|BJ206716.1|BJ206716
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162202533|gb|FC380048.1|FC380048
EST:     TTTTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67725699|gb|BJ975958.1|BJ975958
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162278230|gb|FC454569.1|FC454569
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|7287015|gb|AW599502.1|AW599502
EST:     CCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: CCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67572712|gb|BJ945536.1|BJ945536
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67569747|gb|BJ942571.1|BJ942571
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208382639|gb|DC923239.1|DC923239
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162253343|gb|FC429769.1|FC429769
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18362781|gb|BJ194852.1|BJ194852
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|7583152|gb|AW699316.1|AW699316
EST:     CCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: CCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67720482|gb|BJ970741.1|BJ970741
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208347105|gb|DC909375.1|DC909375
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162263668|gb|FC440126.1|FC440126
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67727691|gb|BJ977950.1|BJ977950
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCATAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162272021|gb|FC448439.1|FC448439
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162263669|gb|FC440127.1|FC440127
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162253342|gb|FC429768.1|FC429768
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208373902|gb|DC940413.1|DC940413
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162213472|gb|FC389149.1|FC389149
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18349279|gb|BJ181328.1|BJ181328
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208392037|gb|DC941885.1|DC941885
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|37831104|gb|BJ589116.1|BJ589116
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT