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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc...

Basic information

species Physcomitrella patens
transcript PP1S282_25V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os02g01560.1 (Oryza sativa), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgag--taccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc-----
||  | ||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| || || || ||  |  |||| |    |  | | |     |  |   |||     |  |   || | |||  | | ||| ||| |    ||  ||| |  | ||||| |     
GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTTgtaagtttgtcattcttgtttacacttaactacacatgcttgaagcttatcttttttttttctgttac-ctgatagcttatatttctaatt--accttttaccatag

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os05g30530.1 (Oryza sativa), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactg-aattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc-
||  | ||||||||||||||| |||||||||||||||| || |  |||||||||||||||||||| ||||| || || || |||||  | |  | | | || | ||| |      |   |  | |   ||  |  |  ||| || | |||| |  |   |    ||  ||||   || | 
GCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCCCCCAGCCATTGGATGCTTGACAAGCTTGGTGGAGCATTTgtaagtacattgtatagccgcaagttatatcacgcagttcaaatgcattctgtataatg-ctaatgtagtgtttggcaaa-tgggaaagggaaatgatttcc

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt--accattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc-------
||  | || |||||||||||| | ||||||||||||||||| ||||| |||||||| |||||||| || || || || ||||||  ||   |||    |||  |  |    |||    |  ||     | | ||  | |||  ||  | || |  ||     |  || ||     | |||       
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcc-tctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G469061_T01 (Zea mays), 5'ss of exon 3
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtac-cattttg--------aactgaattcatacctatgtttgtgag---cggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||| | || ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||| || || || ||||  ||| | |        || |      |  || | |  |   |    | |  |||  |    ||| ||  ||  | |  | |||| |  |               
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTTgtaagtaaacatgtcggggaccataattaggggtacccccaagactcctaatctcagctggtaacccccatc-agcacaaagctgcaaaggcctgatgggc-----------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G158584_T02 (Zea mays), 5'ss of exon 5
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacc--attttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatg-aaacttttgc--
||| | || ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| || || || || || ||||    || ||     |  ||  ||||||   |  |  |           ||||  ||| |||    | || | |   | ||   || | |  | ||   
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaaaatattttctagctttggtacctacaatcttctgtacttccccatttgt--ctaatgct---tcaggttgttcttttttctgtagatctgtgtac

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G176641_T01 (Zea mays), 5'ss of exon 4
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt--accattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatg-aaacttttgc--
||| | || ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| || || || || || |||  || || ||     |  ||  ||||||   |  |  |           ||||  ||| |||    | || | |   | ||   || | |  | ||   
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaatattttctagctttggtacctacaatcttctgtacttccccatttgt--ctaatgct---tcaggttgttcttttttctgtagatctgtgtac

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G125271_T01 (Zea mays), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||| | || ||||||||||||||||||||||||||||| || |||||||||||||| |||||||| || || || || || ||||      |    |   |   |  || | ||| |   |   |  || ||  | | |      ||||| | |     | |||  |           
GCTAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTGGACAAGCTTGGCGGAGCTTTTgtaagtaaagaaattttgtagctctgtcactttttttttctactccatttgtctaatgttt------ctgtttggt----cttttatgtag---------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G035017_T01 (Zea mays), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt--accattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||| | || ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| || || || || || |||  || |  ||     |  ||  ||||||   |  |  |       |  ||| | |||  ||        | | | ||| ||   || |        
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaaaattttctagctttggtacctacaatcttctgtacttctt--cttttgtctgatgtttca--ggttggactttttttctgtag-------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G542753_T01 (Zea mays), 5'ss of exon 6
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagta--ccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||| | || | ||||||||| |||||||||||||||||||| |||||||||||||| |||||||| || || || || || ||||  | || ||     |  ||  ||||||   |  |  |           |||| |   |      ||| |      || ||   |           
GCTAGGGGATCGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaatattttctagctttggtacctacaatcttctgtacttccccatttgtctgatgcttcaggttggtctttttttttctgtag---------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G301096_T01 (Zea mays), 5'ss of exon 3
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt--accattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||| | || ||||||||||| |||||||||||||||||||| ||||||||||||||  ||||||| ||  | || || || |||  || || ||     |  ||  ||||||   |  |  |           ||||  ||  |||       | | | ||| ||   || |        
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCAACAAGCTTGGCAGAGCTTTTgtaagtaaacaatattttctagctttggtacctacaatcttctgtacttccccatttgt--ctgatgcttca--ggttggtctttttttctgtag-------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G060986_T01 (Zea mays), 5'ss of exon 6
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt--accattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||| | || ||||||||||| |||||||||||||||| ||| |||||||||||||| || ||||| ||  | || || ||||||  || || ||     |  ||  ||||||   |  |                                                             
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGTGCCCAAGCATTGGATGCTCGATAAGCTTGGCAGAGCTTTTgtgagtaaacaatattttctagctttggtacctacaatcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G159228_T01 (Zea mays), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt--accattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||| | || ||||||||||| |||||||| |||| ||| || |||||||||||||| |||||||| || || || || || |||  || || ||     |  ||  ||||||   |  |  |           ||||  ||  |||       | | | ||| ||   || |        
GCTAGGGGATTGAAGAAGCACTTGAAGAGCCTCAGTGCTCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaatattttctagctttggtacctacaatcttctgtacttccccatttgt--ctgatgcttca--ggttggtctttttttctgtag-------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA14G06170.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||| | ||  | |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| || || || |||   | ||| | |  | ||  || | |  ||||       | |||      ||| | |   |||| |    |   || | |      |       
GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaaatttaatc--attttgtaaccagttttg------aagggtat----tattttgaagactgatgtgaacctttttcatcctgtatag----

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G05370.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||  | || ||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| || || || |||         || |   || ||   | |    ||   | |  |     ||   | ||    |||| || |||   ||| |   |           
GCGAGAGGATTGAAGAAGCATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtg-------aaagttgctttatctttttaacagttttcaggtgtgcatttcattttaaaagactgatatatatttttcctgtttag---------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G43080.2 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||| | || |||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| || || || |||   | ||| | |   |||| |      ||||   || | |   |    | ||   | ||   ||  | ||   | || |  |            
GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaactttcatc---attcttggtccagttttgaagtgtattat----tttaaagactgatgtgaaacattttcatcctgtacag---------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA16G23730.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatcta-gtgcactgttagataggcttcttaaatgaaacttttgc
||  | || || ||||||||| |||||||||| ||||| || |||||||||||||||||||| |||||||| || || || |||   | |||   ||  ||   |    | ||||   || |     |  |    || || ||| ||| ||   |   ||| || |             
GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaaattt---ctttatcttttgaaaagttttcaag-gatgcatttcaaagatttatgtggactttttttt---cttgtttag------------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA03G06440.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctatgtttgtgagcggaaggtg-gcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
||  | || |||||||| || ||||||||||||||||| || || || ||||||||||||||||| ||||| ||||| ||  ||||  |  | |      || ||     | ||||| |     |  ||   || |   | |  | |  || |   ||||   ||              
GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGGGCCTTTgtatgtacagtactcacagttgttgatgatattatttgtcatttttatttgtaattttcgtttgaactcattttgcctggctgtgtag-------------

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA01G31270.1 (Glycine max), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgta--tctagtgcactgttagataggcttcttaaatgaaacttttgc
||  | || || ||||| ||  |||||||||||||||| || || |||||||||||||||||||| ||||| ||||| ||  ||||  |  | |    ||||       || ||  |   |  ||  |   |||||  | |  |      | |  ||  | | |    ||   || | | 
GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTTgtatgtacagtactcac---aattgtcgatgatattattttactcaaatttatttgtaattttcatttgaactcatgtactcatttggcctggctctgtag-

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt------accattttgaac--tgaattcatacctatgtttgtgagcggaaggtggcttgtatctagt-gcactgttagataggcttcttaaatgaaacttttgc--
||| | || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || || || || || |||      |  ||  | |||  ||||  |  |    | ||  |  || |    |  ||  |||||||| | | ||||   ||   ||||   ||        |||  
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgtt--ttcctgttatctagttgtagtgtttt-tatttttctattattttttgggtgcag

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv13s0067g01820.t01 (Vitis vinifera), 5'ss of exon 1
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt-accattttgaactgaattcatacctatgtttgtgagcggaaggtggc-ttgtatctagtgcactgttagataggcttcttaaatgaaact-tttgc----
      || ||||||||||||||||||||||||||||| || |||||||||||||| |||||||| || || || || || ||| |  | | ||  |   |||||||  | | | |     |         | || | ||   | ||   | |   | |  || |  || |  || ||||     
-----AGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaaaatctgttcctgattcatatttttctatcgactcatttcacacccttatctcacatccaaaatcattgatggctcatccataatcctatttgtatag

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctat-gtttgtgagcggaaggtggcttgtatctagt-gcactgttagataggcttcttaaatgaaacttttgc
|| || || || ||||| |||||||||||||| ||||| || |||||||||||||||||||| || || || || || || |||   |   |   || | |   |  | ||   ||   |  |  ||       |  | || | ||  || |  |  | ||| | |  ||  |       
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagcttttctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag--

upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ26570 (Selaginella moellendorffii), 5'ss of exon 2
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaatt--catacctatgtttgtgagcggaaggtggc-ttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc
|  |||||   |||||||||| |||||  ||||||||| || ||||||||||||||   |||||| || || |||||||| |||  |  ||     |   ||  |  |  ||  |  ||| ||  | || ||| |||  | |   |                                   
GTGCGCGGGCCGAAGAAGCATCTGAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTCgtaagtctctcttcccctttgtttttcccaggtagatccgtgcgctcacggcggccttgcttttccag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67710125|gb|BJ965862.1|BJ965862
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|162179274|gb|FC356223.1|FC356223
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|18367098|gb|BJ199178.1|BJ199178
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|18360158|gb|BJ192220.1|BJ192220
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|162259821|gb|FC435956.1|FC435956
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|162190843|gb|FC368041.1|FC368041
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|18368232|gb|BJ200317.1|BJ200317
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|208372562|gb|DC940809.1|DC940809
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|162279161|gb|FC455500.1|FC455500
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|162258719|gb|FC434518.1|FC434518
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|18371206|gb|BJ202808.1|BJ202808
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|162280391|gb|FC456096.1|FC456096
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|18325295|gb|BJ157291.1|BJ157291
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|162170018|gb|FC345071.1|FC345071
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|162206405|gb|FC383398.1|FC383398
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|162263566|gb|FC438854.1|FC438854
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|18366461|gb|BJ198540.1|BJ198540
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|67572957|gb|BJ945781.1|BJ945781
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|67718208|gb|BJ968467.1|BJ968467
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|18327820|gb|BJ159824.1|BJ159824
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|18325583|gb|BJ157580.1|BJ157580
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|18366927|gb|BJ199007.1|BJ199007
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
EST: gi|208346219|gb|DC909525.1|DC909525
EST:     GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC                         GCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG
genomic: GGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 12

GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtacca ... tgtgttctagGCCCCCAAGCCCTCTCCAGGGCCCCACAAGGAACGAGAATGTCTGCCTTTGGTGGTTATGTTGAGGAATCGGTTGAAGTATGCCTTAACCTACCGCGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaaa