1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATACTCCTGTTCCGCATTTCTCCTTGCTTCGCGCGTGGCACTGCTGAGTACGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAGgtaatttctcgattctgttggccttttgtatgttagatatagctggaattatttaggaattgcctatcagcggaagcctgcttcaacgccatcctctctt...
species | Physcomitrella patens |
transcript | PP1S281_23V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAG TATGAAAAAGTGGAGAAGATTGGGGAAGGCATGTACGGAGTGGTGTACAAGEST: gi|100446825|gb|CJ971124.1|CJ971124
genomic: CGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAGgtaatttctc ... aatgtggcagTATGAAAAAGTGGAGAAGATTGGGGAAGGCATGTACGGAGTGGTGTACAAG
EST: CGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAG TATGAAAAAGTGGAGAAGATTGGGGAAGGCATGTACGGAGTGGTGTACAAGEST: gi|18350355|gb|BJ182406.1|BJ182406
genomic: CGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAGgtaatttctc ... aatgtggcagTATGAAAAAGTGGAGAAGATTGGGGAAGGCATGTACGGAGTGGTGTACAAG
EST: CGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAG TATGAAAAAGTGGAGAAGATTGGGGAAGGCATGTACGGAGTGGTGTACAAGEST: gi|100385012|gb|BY987475.1|BY987475
genomic: CGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAGgtaatttctc ... aatgtggcagTATGAAAAAGTGGAGAAGATTGGGGAAGGCATGTACGGAGTGGTGTACAAG
EST: CGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAG TATGAAAAAGTGGAGAAGATTGGGGAAGGCATGTACGGAGTGGTGTACAAG
genomic: CGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAGgtaatttctc ... aatgtggcagTATGAAAAAGTGGAGAAGATTGGGGAAGGCATGTACGGAGTGGTGTACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACTCCTGTTCCGCATTTCTCCTTGCTTCGCGCGTGGCACTGCTGAGTACGCTGAATTTCGGTGTGCCCTGTCTTCCTTCAAGCTTTCCAATGGAACAGgtaatttctcgattctgttggccttttgtatgttagatatagctggaattatttaggaattgcctatcagcggaagcctgcttcaacgccatcctctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT