1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGACTGGTGGGGAGATTGGCCATGATGTCTACTTCTCGATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaatcttgatccataacgtattttcttgtacaaatgctagcgcctgtgtaggctattttgagatttcatacagtggttggggaagtagttctgacgctgcctttgacatgttcacag
species | Physcomitrella patens |
transcript | PP1S27_81V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|100378044|gb|BY949652.1|BY949652
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|18350543|gb|BJ182594.1|BJ182594
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|18358867|gb|BJ190926.1|BJ190926
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|100443800|gb|BY963897.1|BY963897
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|100379954|gb|BY968774.1|BY968774
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|162271433|gb|FC447006.1|FC447006
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: CGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|18354666|gb|BJ186724.1|BJ186724
genomic: CGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: TTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|100405134|gb|BY955379.1|BY955379
genomic: TTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|100432089|gb|BY960329.1|BY960329
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|100446848|gb|CJ971147.1|CJ971147
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|18358207|gb|BJ190266.1|BJ190266
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTCEST: gi|67569431|gb|BJ942255.1|BJ942255
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
EST: TCGACACCAACTA TCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
genomic: TCGACACCAACTAgtatgtacaa ... atgttcacagTCACTACATCGTTCCAGAGTTGAGCAGTGAGACAAAGTTCATGTACTCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTGGTGGGGAGATTGGCCATGATGTCTACTTCTCGATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaatcttgatccataacgtattttcttgtacaaatgctagcgcctgtgtaggctattttgagatttcatacagtggttggggaagtagttctgacgctgcctttgacatgttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG