Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCACCGGGTCCCGAGGTCAGGTGACCCAAGTGCGTGTGAAGTTTCTGGATGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaaccttgtctgtcctgttctactcttgtggaatatctcatgttgtggtctccgtccttgcaatacctttcagggtcgtcggttttcagggtttct...

Basic information

species Physcomitrella patens
transcript PP1S279_27V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S279_27V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDP05500 (Chlamydomonas reinhardtii), 5'ss of exon 3
CGCACCGGGTCCCGAGGTCAGGTGACCCAAGTGCGTGTGAAGTTTCTGGATGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaaccttgtctgtcctgttctactcttgtggaatatctcatgttgtggtctccgtccttgcaatacctttcagggtcgtcggttttcagggtttct----
                     |||||||| ||||| || ||||| ||||| || || ||||| || |||||||||||||||||||| || || || || |||    ||   | ||| || |  ||| |    ||||    | |     |  |      | |  | |   | || |    | | |||      | ||        
---------------------GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATGCGCAACGTGAAGGGCCCCGTCCGCGAGGgtgagcacgc-gactgccccgcgctagt---atggagctgcccggagggcagagcagcttcggggagccctttgccaactggacggagaggggtgtcgacagcg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67725783|gb|BJ976042.1|BJ976042
EST:     TGATCAAGACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162212327|gb|FC388437.1|FC388437
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|208394747|gb|DC924078.1|DC924078
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162249275|gb|FC424803.1|FC424803
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|7287057|gb|AW599544.1|AW599544
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162214675|gb|FC390706.1|FC390706
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|15730043|gb|BI741633.1|BI741633
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67716831|gb|BJ967090.1|BJ967090
EST:     TGATCAAAACCGACTTGTCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162234749|gb|FC410587.1|FC410587
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162227103|gb|FC402278.1|FC402278
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162222350|gb|FC397136.1|FC397136
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67573986|gb|BJ946810.1|BJ946810
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|37835404|gb|BJ593416.1|BJ593416
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162209102|gb|FC385126.1|FC385126
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162223045|gb|FC399962.1|FC399962
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|19783021|gb|BQ039954.1|BQ039954
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162193771|gb|FC369205.1|FC369205
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|18353933|gb|BJ185988.1|BJ185988
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|19785606|gb|BQ040344.1|BQ040344
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162221218|gb|FC398457.1|FC398457
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162253946|gb|FC430203.1|FC430203
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67507538|gb|BJ940420.1|BJ940420
EST:     TGATCAAAACCGACTTATCATGCNCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162209103|gb|FC385127.1|FC385127
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|208350004|gb|DC910239.1|DC910239
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|6167353|gb|AW145617.1|AW145617
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67718190|gb|BJ968449.1|BJ968449
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|37851820|gb|BJ609828.1|BJ609828
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162249276|gb|FC424804.1|FC424804
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162193772|gb|FC369206.1|FC369206
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67696288|gb|BJ956521.1|BJ956521
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162234750|gb|FC410588.1|FC410588
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|18345939|gb|BJ177982.1|BJ177982
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162221149|gb|FC397790.1|FC397790
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162233248|gb|FC409590.1|FC409590
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67572907|gb|BJ945731.1|BJ945731
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67725349|gb|BJ975608.1|BJ975608
EST:     TGATCAAAACCGACTTGTCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162202318|gb|FC379157.1|FC379157
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|37824688|gb|BJ582754.1|BJ582754
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|208350626|gb|DC906228.1|DC906228
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162239552|gb|FC414065.1|FC414065
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67726677|gb|BJ976936.1|BJ976936
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|18345573|gb|BJ177616.1|BJ177616
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67697375|gb|BJ957608.1|BJ957608
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|37825052|gb|BJ583118.1|BJ583118
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162221148|gb|FC397789.1|FC397789
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|15262023|gb|BI437333.1|BI437333
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|7047326|gb|AW477220.1|AW477220
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|15261477|gb|BI436787.1|BI436787
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67578806|gb|BJ950973.1|BJ950973
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|67717267|gb|BJ967526.1|BJ967526
EST:     TGATCAAGACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
EST: gi|162253945|gb|FC430202.1|FC430202
EST:     TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAG                         GTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT
genomic: TGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 54

CGCACCGGGTCCCGAGGTCAGGTGACCCAAGTGCGTGTGAAGTTTCTGGATGATCAAAACCGACTTATCATGCGCAACGTGAAGGGGCCAGTGCGTGAAGgtacaaacct ... gtgtttgcagGTGATATCCTGACTCTTCTAGAGTCTGAGAGAGAGGCAAGGAGGCTTCGGTGAAAAACCCGAAACTAGCGGTTTCCTAGCCTGATCTTACTGTATGCAAC




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