1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTCGGTGTCACTTTGGGACCCAAGGGACGCAACGTCGTGCTTGAAAGTAAGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtgtctccccttacgtgagggtcgaggttcatgtgtttctgctccttggaaatctcctgagaaccacgtggcgaactcaagtaatgcacttgcttatgatgggattagctagttgaattgactatggcgctgaactcaatgtag
species | Physcomitrella patens |
transcript | PP1S276_75V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTATGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|208357238|gb|DC910649.1|DC910649
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|162187015|gb|FC363421.1|FC363421
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTATGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|18354362|gb|BJ186418.1|BJ186418
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAEST: gi|67572411|gb|BJ945235.1|BJ945235
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGEST: gi|67569513|gb|BJ942337.1|BJ942337
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTG
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|18369385|gb|BJ201471.1|BJ201471
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|56082257|gb|BJ176717.2|BJ176717
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|162186625|gb|FC363597.1|FC363597
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTATGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|18372339|gb|BJ203941.1|BJ203941
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|18355098|gb|BJ187157.1|BJ187157
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAEST: gi|18372360|gb|BJ203962.1|BJ203962
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|100363541|gb|BY966441.1|BY966441
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|22492170|gb|BU052093.1|BU052093
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAEST: gi|18366797|gb|BJ198876.1|BJ198876
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
EST: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAG GTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
genomic: AGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtg ... ctcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCGGTGTCACTTTGGGACCCAAGGGACGCAACGTCGTGCTTGAAAGTAAGTACGGGTCCCCCAAGATTGTGAACGACGGTGTCACCGTGGCCAAGGAGgttagtggtgtctccccttacgtgagggtcgaggttcatgtgtttctgctccttggaaatctcctgagaaccacgtggcgaactcaagtaatgcacttgcttatgatgggattagctagttgaattgactatggcgctgaactcaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG