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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcacttgacataggtctttttttgactttagcaagttgaaattttccttggcagtacagtatgtcggcaggaataaagtttggagtgagtctgaa...

Basic information

species Physcomitrella patens
transcript PP1S272_13V6.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162205230|gb|FC380912.1|FC380912
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|67697134|gb|BJ957367.1|BJ957367
EST:     GCTTTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|67573748|gb|BJ946572.1|BJ946572
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|67693986|gb|BJ954219.1|BJ954219
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|67692354|gb|BJ952587.1|BJ952587
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|18361453|gb|BJ193519.1|BJ193519
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|67508506|gb|BJ941371.1|BJ941371
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|67693480|gb|BJ953713.1|BJ953713
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|67569108|gb|BJ941932.1|BJ941932
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|67570694|gb|BJ943518.1|BJ943518
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|37850310|gb|BJ608318.1|BJ608318
EST:     TGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCNTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: TGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|18366564|gb|BJ198643.1|BJ198643
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|208367515|gb|DC955695.1|DC955695
EST:     TGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: TGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|162205229|gb|FC380911.1|FC380911
EST:     CAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: CAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|37846944|gb|BJ604952.1|BJ604952
EST:     GCTNTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|162161409|gb|FC337615.1|FC337615
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
EST: gi|67692348|gb|BJ952581.1|BJ952581
EST:     GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAG                         GTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT
genomic: GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcact ... cgcaatgcagGTACGTAATCCTATGCAATGGCTAGCCTTAGTAGCAAGTCCGCGCTGGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCTGATCCAGCTGTTCATTCACTCATATAATCTTTCGTCTCGAGgtgtgtcacttgacataggtctttttttgactttagcaagttgaaattttccttggcagtacagtatgtcggcaggaataaagtttggagtgagtctgaa

- - - -  CAGCTG
- - - - -  GCTGTT