Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtcttagacctctccttctcgcattttcgtgttatgttagattggtttatctggttttctacaatgttgctcttcgtctgtgtctgctaacattttattagggtgtaacag

Basic information

species Physcomitrella patens
transcript PP1S267_10V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S267_10V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 5'ss of exon 2
AATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtcttagacctctccttctcgcattttcgtgttatgttagattggtttatctggttttctacaatgttgctcttcgtctgt-gtctgctaacattttattagggtgtaacag
  ||||||| ||||| ||||| |||||||||||  |||| |||||||||||| |  | || |||||||||||| |  |  |    |           ||   | | | ||||  |||  ||    | || || |  ||||||   || |  | | ||      |||                   
GGTGATGCTGGTTGGATGGGGAGGCAACAACGGCACCACGCTCACGGCTGGTGTCATCGCCAACAGAGAgtaattaattaattaattagataaaatcttaattataacgttatgttgaattgctcgtttatcca-gatgttgtaattggattctagttcatccacaaaaa---------------

upper sequence: PP1S267_10V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 2
AATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtcttagacctctccttctcgcattttcgtgttatgttagattggtttatctggttttctacaatgttgctcttcgtctgtgtctgctaacattttattagggtgtaacag
  ||||||| || |||||||||||||||||||| || || || ||||||||  |  | || ||||| ||||||||    || | |||   |||   |||||    || | ||| ||  | | | |  | || |   |  ||       |   ||||  |      ||| || ||          
GGTGATGCTCGTGGGGTGGGGCGGCAACAACGGCTCAACGCTGACGGCTGGGGTCATCGCCAACAGGGAgtaagt----gatcactcacgctctacttttctgcctaagctagcttcatctgttttttcttttctgaatttaactgatgatggtgtgag------tttaatcag----------

upper sequence: PP1S267_10V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 2
AATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtcttagacctctccttctcgcattttcgtgttatgttagattggtttatc--tggttttctacaatgttgctcttcgtctgtgtctgctaacattttattagggtgtaacag
  |||||||||| |||||||| ||||||||||| ||||| || ||||||||  |  |||| ||||| |||| |||  ||   ||    || ||  || || |  ||  |||   ||   ||||   |||  |   | |    ||   || ||   ||  || |                       
GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta---cttaatttgtcctatatt-gctttccgttgttttcagttattaatggcctaacagagaactgaattttgttgttggttgtttcag-------------------

upper sequence: PP1S267_10V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 2
AATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtcttagacctctcct------tctcgcattttcgtgttatgttagattggtttatctggttttctacaatgttgctcttcgtctgtgtctgctaacattttattag--ggtgtaacag
  | |||||||| |||||||| ||||||||||| ||||| || ||||||||  |  |||| ||||| ||||||||  |  |  | |||          | ||||   | |      ||   | ||| ||||  ||| | |     | || |||  ||     |||  ||  | ||  | |  |  ||  |||
GGTCATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgcttaatttgtcccgtattgctacccattcatgcggacgagtattctcgttcatctt-tttcccattccatggc-cttaatcgaaacctg--aatctgttggtggttgtcgtttcag

upper sequence: PP1S267_10V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA18G02210.2 (Glycine max), 5'ss of exon 2
AATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtcttagacctctccttctcgcattttcgtgttatgttagattggtttatctggttttctacaatgttgctcttcgtctgtgtctgctaacattttattagggtgtaacag
  |||||||||| || ||||| || |||||||| || || ||||| | |||| || ||||||||||||||| ||| |        |       |  |||| || ||||           || | |  |||  |    | | | || |  | ||| | |  | |  | | |              
GGTGATGCTTGTGGGTTGGGGTGGAAACAACGGCTCTACCCTCACCGGTGGTGTTATTGCTAACAGAGAgttagtttcgatttcttagcctctgtcttttggtattattaagaggaaccttgtgttatttatt----tatgggtcatt-tttgtattttatgatttctcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100365484|gb|BY966619.1|BY966619
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|162226051|gb|FC401329.1|FC401329
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18325029|gb|BJ157025.1|BJ157025
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18327430|gb|BJ159432.1|BJ159432
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18359347|gb|BJ191408.1|BJ191408
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|162165793|gb|FC340922.1|FC340922
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|162150837|gb|FC327109.1|FC327109
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18363706|gb|BJ195778.1|BJ195778
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|67719437|gb|BJ969696.1|BJ969696
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|100446640|gb|CJ970939.1|CJ970939
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|162269000|gb|FC445492.1|FC445492
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|100427579|gb|BY977568.1|BY977568
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|100446102|gb|CJ970401.1|CJ970401
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|100442189|gb|BY963082.1|BY963082
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|100450197|gb|CJ974142.1|CJ974142
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|162169895|gb|FC346251.1|FC346251
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|208356703|gb|DC902535.1|DC902535
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|100403191|gb|BY991080.1|BY991080
EST:     GGCGGCAATAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|100430782|gb|BY978394.1|BY978394
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|100441349|gb|BY962638.1|BY962638
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18358390|gb|BJ190449.1|BJ190449
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTG
EST: gi|162166972|gb|FC343357.1|FC343357
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18328239|gb|BJ160243.1|BJ160243
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTA
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTA
EST: gi|100447987|gb|CJ972286.1|CJ972286
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         ANGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18331887|gb|BJ163899.1|BJ163899
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|67704669|gb|BJ964902.1|BJ964902
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18354151|gb|BJ186207.1|BJ186207
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|162279671|gb|FC455904.1|FC455904
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|67574163|gb|BJ946987.1|BJ946987
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|100446153|gb|CJ970452.1|CJ970452
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18374739|gb|BJ206317.1|BJ206317
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18359531|gb|BJ191592.1|BJ191592
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|162241553|gb|FC418614.1|FC418614
EST:     GCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|162153386|gb|FC329896.1|FC329896
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|162180539|gb|FC356181.1|FC356181
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18325715|gb|BJ157712.1|BJ157712
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|7207697|gb|AW561694.1|AW561694
EST:     CGGCACCAGCGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: CGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18327112|gb|BJ159113.1|BJ159113
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
EST: gi|18371837|gb|BJ203439.1|BJ203439
EST:     GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA                         AGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG
genomic: GGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 28 (upstream exon), 29 (downstream exon)
Score: 8

AATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtctta ... ggtgtaacagAGGTATCTCTTGGGTGACCAAGGATGGCGTGCAACACGCTAACTACTTTGGGTCTCTTACTCAAGCATCCACCTGCCGCGTGGGCGCTTTCCAGGGCGAG




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