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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTTGGCCAAGTGAAGATTCTAGAACACAAGTCAAACAAAAAGGTTCGCCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGGgtaagtttgcaagttttctgtgcagtgtgtttgggaagcttgaatatggtttccgatcgtgaacatagaatgctattgcttatcccttatcggcacacat...

Basic information

species Physcomitrella patens
transcript PP1S25_241V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348636|gb|DC913280.1|DC913280
EST:     CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGG                         TTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG
genomic: CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGGgtaagtttgc ... ttctctgcagTTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG
EST: gi|100372768|gb|BY948694.1|BY948694
EST:     CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGG                         TTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG
genomic: CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGGgtaagtttgc ... ttctctgcagTTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG
EST: gi|162211496|gb|FC387368.1|FC387368
EST:     CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGG                         TTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG
genomic: CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGGgtaagtttgc ... ttctctgcagTTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG