1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGCATGGTGGAGAAGCTCTACCAGCAGTTGCGGCGGCAGTAACCTAACGGTCTCCATTTGAAGTGCCAGATTCGGACTACTGTGTCCAATTGCCCATAGgtgcgttctggatgtgaagcccgagagttgtgataggataccaaagtatttctatagggctgatgtcattctttggtccatcttgatgcccttcttgcag...
species | Physcomitrella patens |
transcript | PP1S256_73V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCTCCATTTGAAGTGCCAGATTCGGACTACTGTGTCCAATTGCCCATAG GAGCCTTCCTTCCCCCTTGTACCACCGCATGATCACTGTTTAAGAAGGTTGEST: gi|100403020|gb|BY973467.1|BY973467
genomic: GTCTCCATTTGAAGTGCCAGATTCGGACTACTGTGTCCAATTGCCCATAGgtgcgttctg ... tccaattcagGAGCCTTCCTTCCCCCTTGTACCACCGCATGATCACTGTTTAAGAAGGTTG
EST: GTCTCCATTTGAAGTGCCAGATTCGGACTACTGTGTCCAATTGCCCATAG GAGCCTTCCTTCCCCCTTGEST: gi|208384951|gb|DC903458.1|DC903458
genomic: GTCTCCATTTGAAGTGCCAGATTCGGACTACTGTGTCCAATTGCCCATAGgtgcgttctg ... tccaattcagGAGCCTTCCTTCCCCCTTG
EST: GTCTCCATTTGAAGTGCCAGATTCGGACTACTGTGTCCAATTGCCCATAG GAGCCTTCCTTCCCCCTTGTACCACCGCATGATCACTGTTTAAGAAGGTTG
genomic: GTCTCCATTTGAAGTGCCAGATTCGGACTACTGTGTCCAATTGCCCATAGgtgcgttctg ... tccaattcagGAGCCTTCCTTCCCCCTTGTACCACCGCATGATCACTGTTTAAGAAGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCATGGTGGAGAAGCTCTACCAGCAGTTGCGGCGGCAGTAACCTAACGGTCTCCATTTGAAGTGCCAGATTCGGACTACTGTGTCCAATTGCCCATAGgtgcgttctggatgtgaagcccgagagttgtgataggataccaaagtatttctatagggctgatgtcattctttggtccatcttgatgcccttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG