Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTACTCCCTTCCAACGGTATGTCGGCGCTGCTAATTTTACTACAGCGAGCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcctctttcgcgatgtctgtgctcatgttctcccttactgagattgttcgagagaagtttcaaccagggataagggtttagggtaggaggtccttgtcagttggctgcgtctgtattgcacttctgcaacattctgtaattgatctttgaatctaagatttgagtggtttgctgttcatag

Basic information

species Physcomitrella patens
transcript PP1S243_27V6.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100410611|gb|BY992184.1|BY992184
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|162269880|gb|FC445397.1|FC445397
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100384546|gb|BY987405.1|BY987405
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100426595|gb|BY977307.1|BY977307
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|18330405|gb|BJ162411.1|BJ162411
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|208397735|gb|DC912532.1|DC912532
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100354259|gb|BY945787.1|BY945787
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100407208|gb|BY974056.1|BY974056
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100422036|gb|BY957830.1|BY957830
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|67709320|gb|BJ965136.1|BJ965136
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100440883|gb|BY962371.1|BY962371
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100445033|gb|BY964332.1|BY964332
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100354013|gb|BY983424.1|BY983424
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|208354965|gb|DC914229.1|DC914229
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100411934|gb|BY992412.1|BY992412
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|67571756|gb|BJ944580.1|BJ944580
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100353507|gb|BY964841.1|BY964841
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100420723|gb|BY993477.1|BY993477
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
EST: gi|100413878|gb|BY975018.1|BY975018
EST:     GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCG                         GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC
genomic: GCATCATGTACCCTTACAAGTCGAACACAATTCCATTTCAGTCTGTGCCGgtatggtcct ... ctgttcatagGCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCAC