1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTATATTCGGACACATCTGCAGTATTTTATGAGCAAAGGGgtaatttaccttaccatgccttagcccttgagaaagagccgcaactgtcagaagatgagcgtcaagataatgctgtagattttctccttgatgataagtt...
species | Physcomitrella patens |
transcript | PP1S23_46V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTATATTCGGACACATCTGCAGTATTTTATGAGCAAAGGG TTTCGGCTGTGAGGTCGTTGGCTGTTGAAGCAGAATCGTACGTTCGGAGGGEST: gi|162265839|gb|FC442426.1|FC442426
genomic: GTATATTCGGACACATCTGCAGTATTTTATGAGCAAAGGGgtaatttacc ... ctttctccagTTTCGGCTGTGAGGTCGTTGGCTGTTGAAGCAGAATCGTACGTTCGGAGGG
EST: GTATATTCGGACACATCTGCAGTATTTTATGAGCAAAGGG TTTCGGCTGTGAGGTCGTTGGCTGTTGAAGCAGAATCGTACGTTCGGAGGG
genomic: GTATATTCGGACACATCTGCAGTATTTTATGAGCAAAGGGgtaatttacc ... ctttctccagTTTCGGCTGTGAGGTCGTTGGCTGTTGAAGCAGAATCGTACGTTCGGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATATTCGGACACATCTGCAGTATTTTATGAGCAAAGGGgtaatttaccttaccatgccttagcccttgagaaagagccgcaactgtcagaagatgagcgtcaagataatgctgtagattttctccttgatgataagtt
- - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - GCAAAG