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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGCTGCAACGGAGTGGTGGTGCAGGACCCAGAGTTGGGTCAGGTCATTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtcacttatgactgccttgcaatgcgtcacggtttgaagcatgcacgtttggtatttaactgtaaagaatatgtcacctacctgatgtgctcca...

Basic information

species Physcomitrella patens
transcript PP1S23_225V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S23_225V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM5G835323_T02 (Zea mays), 5'ss of exon 4
GTTTTGCTGCAACGGAGTGGTGGTGCAGGACCCAGAGTTGGGT-CAGGTCATTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtcacttatgactgccttgcaatgcgtcacggtttgaagcatgcacgtttggtatttaactgtaaagaatatgtcacctacctgatgtgctcca-----
                                    |   | |  ||||||||||||| |||||||| ||| ||||||| ||||| || || |||||||||||||    || |      |||    |  || |   || || ||  |||| | |    |||| ||  |  | |       |    | ||||||||  |||      
---------------------------------GCTGCCCGCTATAGGTCATTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcaccattcgg---tgcaacaccttgtg---cgcttagagacatgta-gcaacgtatgta--taaagacggctgattctgttcctgatgttgtcctggcag

upper sequence: PP1S23_225V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM5G835323_T01 (Zea mays), 5'ss of exon 4
GTTTTGCTGCAACGGAGTGGTGGTGCAGGACCCAGAGTTGGGTCAGGTCATTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtcacttatgactgccttgcaatgcgtcacggtttgaagcatgcacgtttggtatttaactgtaaagaatatgtcacctacctgatgtgctcca-----
                                              ||||||||||| |||||||| ||| ||||||| ||||| || || |||||||||||||    || |      |||    |  || |   || || ||  |||| | |    |||| ||  |  | |       |    | ||||||||  |||      
----------------------------------------------GTCATTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcaccattcgg---tgcaacaccttgtg---cgcttagagacatgta-gcaacgtatgta--taaagacggctgattctgttcctgatgttgtcctggcag

upper sequence: PP1S23_225V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G073535_T05 (Zea mays), 5'ss of exon 3
GTTTTGCTGCAACGGAGTGGTGGTGCAGGACCCAGAGTTGGGT-CAGGTCATTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtcactt--atgactgccttgc--aatgcgtcacggtttgaagcatgcacgtttggtatttaactgtaaagaatatgtcacctacctgatgtgctcca
| | | ||||      ||||   | | |  |     ||  | | |||||||||||||| || ||||||||||| ||||||||  | |  || || || |||||| |    |  |  |   ||| |  ||  ||| |           |   ||  | |||   | | | | |    |   |        ||| ||   || |   
GGTAT-CTGCCGGTTGGTGGATATACTGATCTGTTTGTCCGCTGCAGGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGgtattcagaatcttcagacctggccagctgaatactgttttaccataccgatagatgttcaatctgttaatactgatcgtgcaattattacttgtcttggtag-

upper sequence: PP1S23_225V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv19s0090g00420.t01 (Vitis vinifera), 5'ss of exon 4
GTTTTGCTGCAACGGAGTGGTGGTGCAGGACCCAGAGTTGGGTCAGGTCATTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtcacttatgactgccttgcaatgcgtcacggtttgaagcatgcacgtttggtatttaactgtaaagaatatgtcacctacctgatgtgctcca
                                              || ||||| ||||| ||||| ||||| ||||| || ||||| ||||||||||||||| || |||   |   |  || |  |     | |    ||| |  |     |     |||     ||     | | ||     |||             
----------------------------------------------GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGgtaattatcatcaacacccaccatagag---attatttattgtaagaaatttgacccatatcctgatgatgctattgtgatttttacag-----------

upper sequence: PP1S23_225V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDP05192 (Chlamydomonas reinhardtii), 5'ss of exon 2
GTTTTGCTGCAACGGAGTGGTGGTGCAGGACCCAGAGTTGGGTCAGGTCATTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTC---GTCCAGgtacttgtcacttatgactgccttgcaatgcgtcacggtttgaagcatg--cacgtttggtatttaactgtaaagaatatgtcacctacctgatgtgctcca-----------------------------------------------------------------------
                              ||| ||| ||||  ||||||||||||||||||| |||||||| |||||||||  | |||| ||    | ||||   || || |   | |||    |     | |||| ||| | |   |  |   || |  |   || |  | ||||       |   ||| |    |  || |                                                                        
------------------------------CCCGGAGCTGGGCAAGGTCATTCAGCTGCAGGGCGACCAGCGCAAGAATGTCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtc-cgggtcgggtcgggactacatacgaatttcagttctaaatctcgattgcgctagcgctagcccttcggagcgcgggccgcaccttttaacagccctaacactatggtggtgctacccttgcccccctgcaacccacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829462|gb|BJ587474.1|BJ587474
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|6167591|gb|AW145855.1|AW145855
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|162276238|gb|FC452397.1|FC452397
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|208358729|gb|DC935171.1|DC935171
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67721559|gb|BJ971818.1|BJ971818
EST:     TCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67724672|gb|BJ974931.1|BJ974931
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37839287|gb|BJ597295.1|BJ597295
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67727534|gb|BJ977793.1|BJ977793
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|18337516|gb|BJ169540.1|BJ169540
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37829000|gb|BJ587012.1|BJ587012
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67508278|gb|BJ941147.1|BJ941147
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37834738|gb|BJ592750.1|BJ592750
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67700170|gb|BJ960403.1|BJ960403
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37834966|gb|BJ592978.1|BJ592978
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67725936|gb|BJ976195.1|BJ976195
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|162208525|gb|FC384488.1|FC384488
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67693062|gb|BJ953295.1|BJ953295
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|162251362|gb|FC427679.1|FC427679
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67691607|gb|BJ951840.1|BJ951840
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67508391|gb|BJ941258.1|BJ941258
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67578564|gb|BJ950731.1|BJ950731
EST:     TTCAGCTGCANGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACG
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACG
EST: gi|18332980|gb|BJ164994.1|BJ164994
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|162208526|gb|FC384489.1|FC384489
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|18333511|gb|BJ165526.1|BJ165526
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|15262039|gb|BI437349.1|BI437349
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTATACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37844022|gb|BJ602030.1|BJ602030
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|15261958|gb|BI437268.1|BI437268
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37846793|gb|BJ604801.1|BJ604801
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|162237866|gb|FC413949.1|FC413949
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTTTCCAACTTTTTTGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37846621|gb|BJ604629.1|BJ604629
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|162237867|gb|FC413950.1|FC413950
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|162236744|gb|FC413423.1|FC413423
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67704592|gb|BJ964825.1|BJ964825
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|18341166|gb|BJ173199.1|BJ173199
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAG-ACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37839092|gb|BJ597100.1|BJ597100
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67723089|gb|BJ973348.1|BJ973348
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|15729227|gb|BI741208.1|BI741208
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67701465|gb|BJ961698.1|BJ961698
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37834987|gb|BJ592999.1|BJ592999
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37824019|gb|BJ582085.1|BJ582085
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|19781060|gb|BQ039651.1|BQ039651
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67717419|gb|BJ967678.1|BJ967678
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTT
EST: gi|67720039|gb|BJ970298.1|BJ970298
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67699591|gb|BJ959824.1|BJ959824
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|15261226|gb|BI436536.1|BI436536
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|162251363|gb|FC427680.1|FC427680
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|37835920|gb|BJ593932.1|BJ593932
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67697219|gb|BJ957452.1|BJ957452
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67719232|gb|BJ969491.1|BJ969491
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|162276237|gb|FC452396.1|FC452396
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67722655|gb|BJ972914.1|BJ972914
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|18340248|gb|BJ172276.1|BJ172276
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67691496|gb|BJ951729.1|BJ951729
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|7648320|gb|AW739303.1|AW739303
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|18341764|gb|BJ173799.1|BJ173799
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|208388299|gb|DC949299.1|DC949299
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67728297|gb|BJ978556.1|BJ978556
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67573832|gb|BJ946656.1|BJ946656
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGT
EST: gi|67569793|gb|BJ942617.1|BJ942617
EST:     TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAG                         GCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGA
genomic: TTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 198

GTTTTGCTGCAACGGAGTGGTGGTGCAGGACCCAGAGTTGGGTCAGGTCATTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtca ... gtcctcgcagGCTGGGATTGTGAAGAAGGACCTGATAAAAATTCACGGTTTTTAGACCTGTGGGAGTCTAAGATGCGGTGGTGCTGATAATGATATTCGTAACCTCGATG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTGCTGCAACGGAGTGGTGGTGCAGGACCCAGAGTTGGGTCAGGTCATTCAGCTGCAGGGTGACCAGCGGAAGAATGTCTCCAACTTTCTCGTCCAGgtacttgtcacttatgactgccttgcaatgcgtcacggtttgaagcatgcacgtttggtatttaactgtaaagaatatgtcacctacctgatgtgctcca

- - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaata