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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttctttctgcttttccagtgtttgatgtgtcaccacgatcggaccctgacacaatgggcattcttgtcaatctttaaacactgcagtg...

Basic information

species Physcomitrella patens
transcript PP1S239_18V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S239_18V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os01g17170.1 (Oryza sativa), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttctttctgcttttccagtgtttgatgtgtcaccacgatcggaccctgacacaatgggcattct-tgtcaatctttaaacactgcagtg-----
|||||||||||||||||||||||| || ||  | ||||| ||||| |||||  | || ||||||||||||||||||||| | || |||||||||||||| ||||       | | || |    ||| ||  |    |    ||||    |  | |   ||  ||  ||  | |  | |  || | |||           |      
GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccgagctattccgttgtttgcatggaccaacagttcac----actgaagattgttactgtgctcctcttctaacagtttttgtgtgtgatcctttgcag

upper sequence: PP1S239_18V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G043109_T01 (Zea mays), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttctttctgcttttccagtgt-ttgatgtgtcaccacgatcgg--accctgacacaatgggcattcttgtcaatctttaaacactgcagtg
|||| | || ||||| ||||||||||| ||  ||||||| ||||| |||||  | |||||||||||||||||||||||| | || |||||||||||||| |||| | |||||  || |    ||     || | | |||   | | | | |  ||      || | || ||   ||   |||   |  || | |  |||||  
GAACAGGCATGGTGACTTCTTCTCTGCCCTGCTGAAGGCTCAGCCGCAGTTCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatt-tttcgagctattcttttgctatgtatgtagatcgattaactccaaaggttgttgtgccccattgctgatagctgt-gttacttgacctttgcag--

upper sequence: PP1S239_18V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G081462_T02 (Zea mays), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttct-ttctgcttttccagtgt-ttgatgtgtcaccacgatcggaccctgacacaatgggcattcttgtcaatctttaaacact-gcagtg
|||| | ||||| || ||||||||||| ||  | ||||| ||||| |||||  | |||||||||||||||||||||||| | || |||||||||||||| ||||   |||||  || |||| || ||    |   |   |  |   | | | | |   |    | |      ||    ||| | | | | | |  | ||||  
GAACAGGCACGGCGACTTCTTCTCTGCCCTGCTCAAGGCTCAGCCGCAGTTCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaa---tttcgagctattctcctgttaatatacatcagttagctccaaaggttgctgcgcccctctcctaacagctgtgttactatatgaccttttgcag--

upper sequence: PP1S239_18V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA03G27380.1 (Glycine max), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttctttctgc--ttttccagtgtttgatgtgtcaccacgatcggaccctgacacaatgggcattcttgtcaatctttaaacactgcagtg
|||| | || || |||||||||||||| || |||||||||||||| || ||| | |||||||||||||| ||| | ||| |||| |||||||| || || |||| |||| | ||    || |  |||| || |  || | |  ||   | |||   |||   | ||   | ||    ||||   |   | ||   ||     
GAACAGACATGGAGATTTCTTCTCTGCCCTGATGAAGGCACAGCCACAATTTCTAAATGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGTCTATCGgtaactattccctttcgcctaccattttgcattcctttaagattc-ttaagatgaaacctcaatacctagtgc-cagttgttgctagcttaagtttgtgaga

upper sequence: PP1S239_18V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA19G30350.1 (Glycine max), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttctttctgcttttccagtgtttgatgtgtcaccacgatcggaccctgacacaatgggcattcttgtcaatctttaaacactgcagtg-
|||| | || || |||||||||||||| || |||||||||||||| || ||| | |||||||||||||| ||| | ||| |||| |||||||| || || |||| | || | || |   | |  ||      |    |  |   |   |||   |||   | ||   | ||    ||||   |   | ||   ||      
GAACAGGCATGGAGATTTCTTCTCTGCCCTGATGAAGGCACAGCCACAATTTCTAAATGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGTCTATCGgtaacttttcccttttgcttaccattatgcattcctttaagattcttagatgaaacctcaatacctagtgc-cagttgttgctagcttaaggttgtgagaa

upper sequence: PP1S239_18V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT3G56940.2 (Arabidopsis thaliana), 5'ss of exon 4
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagta--tttcgttctttctgcttttcca-gtgtttgatgtgtcaccacgatcggaccctgacacaatgggcattcttgtcaatctttaaacactgcagtg
||||||||| |||||||||||||||||  | ||||| || ||||| |||||  | ||||||||| | |||||||||||| |||| |||||||||||||| |||| ||   |    ||| | |  || || | |||| |      |   |   | | |    | | |  || ||| ||   |                      
GAACCGTCATGGTGATTTCTTCTCTGCTTTGATGAAAGCTCAGCCTCAGTTCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaattaaactaaactctctttagttctcaatgtgtcttgcacattggcctaaccag----taagaggattggctttacag----------------------

upper sequence: PP1S239_18V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttct---ttctgcttttccagtgtttgatgtgtcaccacgatcggaccctgacacaatgggcattcttgtc--aatctttaaacactgcagtg--------------------------------------------------
|||| | || |||||||||||||||||| | ||||||||||| ||||||||  | ||||| |||||||| ||| | |||||||| ||||||||||| || |||| |||    |  |   ||      ||| | ||| |  |   |  | |  ||   | | | |     |   |     |||   |||||||     ||  ||                                                    
GAACAGGCATGGTGATTTCTTCTCTGCATTGATGAAGGCACAACCCCAGTTCCTCAATGATTGGAAGGCAAAGTTGTGGGCTCGATTCTTCTGCCTATCGgtaattatagtataataagtttctacattcaattgtatactagattgcaaatatt--atcttaattttttaccctagtgtgtttaaatctttggcttctcgagaacctctgggattcctctggtcctcttatgacttcccaaatttgtcttgcag

upper sequence: PP1S239_18V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ28505 (Selaginella moellendorffii), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttctttctgcttttccagtgtttgatgtgtcaccacgatcggaccctgacacaatgggcattcttgtcaatctttaaacactgcagtg
|||| | ||||| || |||||||| ||  |  |||| || ||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||      |   | ||  ||| |||  |   ||  |   |   || | |    | ||  | |     |                              
GAACAGGCACGGCGACTTCTTCTCGGCGTTGCTGAAAGCCCAGCCTCAGTTCTTGAACGACTGGAAGGCCAAACTCTGGGCTCGCTTCTTCTGTCTCTCGgtaaag----caaacctttggctcttcttggaatttttagatgctcatgcttccgctcttgctcttccag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162213800|gb|FC389791.1|FC389791
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162271533|gb|FC446482.1|FC446482
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162230148|gb|FC406296.1|FC406296
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTTTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18341110|gb|BJ173143.1|BJ173143
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162252619|gb|FC428650.1|FC428650
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162251492|gb|FC428030.1|FC428030
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162271532|gb|FC446481.1|FC446481
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18333479|gb|BJ165494.1|BJ165494
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|67696886|gb|BJ957119.1|BJ957119
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208369079|gb|DC944522.1|DC944522
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208364710|gb|DC954454.1|DC954454
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162212946|gb|FC388954.1|FC388954
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18340548|gb|BJ172576.1|BJ172576
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162178607|gb|FC353915.1|FC353915
EST:     TCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|19777660|gb|BQ039212.1|BQ039212
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37852361|gb|BJ610369.1|BJ610369
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACCGA
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTA-CGA
EST: gi|162259028|gb|FC436374.1|FC436374
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162240291|gb|FC415974.1|FC415974
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162249791|gb|FC427581.1|FC427581
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37822231|gb|BJ580297.1|BJ580297
EST:     CTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: CTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162171167|gb|FC347781.1|FC347781
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18337945|gb|BJ169969.1|BJ169969
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162165085|gb|FC341626.1|FC341626
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162264296|gb|FC441398.1|FC441398
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162210150|gb|FC386375.1|FC386375
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37839966|gb|BJ597974.1|BJ597974
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208375888|gb|DC926980.1|DC926980
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162267531|gb|FC444282.1|FC444282
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|67692765|gb|BJ952998.1|BJ952998
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|7047238|gb|AW477132.1|AW477132
EST:     AAGGACAAGCTCTGGGCTCG-TTCATTCTGCTTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCAACGAG
genomic: AAGGCCAAGCTCTGGGCTCGTTTC-TTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37838708|gb|BJ596716.1|BJ596716
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162216405|gb|FC393238.1|FC393238
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208375811|gb|DC926903.1|DC926903
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162231969|gb|FC409043.1|FC409043
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18336128|gb|BJ168150.1|BJ168150
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18337008|gb|BJ169032.1|BJ169032
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208349178|gb|DC925919.1|DC925919
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162195402|gb|FC370871.1|FC370871
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162233182|gb|FC409005.1|FC409005
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATG
EST: gi|18340960|gb|BJ172992.1|BJ172992
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162222932|gb|FC399602.1|FC399602
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162215048|gb|FC391336.1|FC391336
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|100362866|gb|BY947568.1|BY947568
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|67698243|gb|BJ958476.1|BJ958476
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162159797|gb|FC335842.1|FC335842
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162181573|gb|FC357875.1|FC357875
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162259547|gb|FC435474.1|FC435474
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208370473|gb|DC952176.1|DC952176
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162174830|gb|FC351622.1|FC351622
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTTTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208379347|gb|DC918991.1|DC918991
EST:     TTTTGAATGACTGGAAGGCCAAGCCCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162249882|gb|FC425683.1|FC425683
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|67725274|gb|BJ975533.1|BJ975533
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162212945|gb|FC388953.1|FC388953
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162274133|gb|FC450205.1|FC450205
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162240557|gb|FC416045.1|FC416045
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162237737|gb|FC413352.1|FC413352
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|67724062|gb|BJ974321.1|BJ974321
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37843367|gb|BJ601375.1|BJ601375
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|7067337|gb|AW497192.1|AW497192
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18336202|gb|BJ168224.1|BJ168224
EST:     CTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: CTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162223753|gb|FC399799.1|FC399799
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18333563|gb|BJ165578.1|BJ165578
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208382579|gb|DC923207.1|DC923207
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162158701|gb|FC335562.1|FC335562
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18338824|gb|BJ170849.1|BJ170849
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162266422|gb|FC443277.1|FC443277
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208361980|gb|DC950457.1|DC950457
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162235481|gb|FC411616.1|FC411616
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208381866|gb|DC923781.1|DC923781
EST:     TTTTGAATGACTGGAAGGCCAAGCTCCGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162267530|gb|FC444281.1|FC444281
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162248404|gb|FC423711.1|FC423711
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37848298|gb|BJ606306.1|BJ606306
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|18333635|gb|BJ165650.1|BJ165650
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208345440|gb|DC917337.1|DC917337
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208379345|gb|DC918989.1|DC918989
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCCACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208349347|gb|DC918055.1|DC918055
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37837782|gb|BJ595790.1|BJ595790
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208398506|gb|DC916505.1|DC916505
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37842316|gb|BJ600324.1|BJ600324
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37852039|gb|BJ610047.1|BJ610047
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162205356|gb|FC382065.1|FC382065
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCN                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162153210|gb|FC328992.1|FC328992
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|67726611|gb|BJ976870.1|BJ976870
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37850565|gb|BJ608573.1|BJ608573
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162237738|gb|FC413353.1|FC413353
EST:     TTTTGAATGACTGGAAGGCCCAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37838748|gb|BJ596756.1|BJ596756
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162259029|gb|FC436375.1|FC436375
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162226838|gb|FC403026.1|FC403026
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208353489|gb|DC918503.1|DC918503
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162230149|gb|FC406297.1|FC406297
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208394803|gb|DC915624.1|DC915624
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|67727752|gb|BJ978011.1|BJ978011
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162213801|gb|FC389792.1|FC389792
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAG
EST: gi|208351380|gb|DC922103.1|DC922103
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|37842356|gb|BJ600364.1|BJ600364
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTTTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208388348|gb|DC949320.1|DC949320
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTNTGCCTCTCN                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|162204990|gb|FC380672.1|FC380672
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
EST: gi|208392864|gb|DC928550.1|DC928550
EST:     TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCT                         GTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG
genomic: TTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 79

GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtattt ... gaaaacgcagGTCTACGTCACCATGTACTTGAATGATGTACAGAGAACCTCATTCTACGAGGGCATTGGTCTCAACACCCGGGACTTCGACATGCACGTGATTGTTGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttctttctgcttttccagtgtttgatgtgtcaccacgatcggaccctgacacaatgggcattcttgtcaatctttaaacactgcagtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT