1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGAAAGAAGGGgtatgatgattttattattattatgtagagtacagcagtagttagtggagagtgttttctaatttctgggctctgaagatatactcatttcacttgtcat...
species | Physcomitrella patens |
transcript | PP1S235_102V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGGAAAGAGGGG TTTCCAATTACAGCCCATCGGGGAAATCCAAGATCTTGAAGGGAGTTGCAEST: gi|67574019|gb|BJ946843.1|BJ946843
genomic: CGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAG-AAAGAAGGGgtatgatgat ... tcgaatgcagTTTCCAATTACAGCC-ATCCGGGAAATC-AAGATCTTGAAGA-AGTTGCA
EST: GCGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGAAAGAAGGG TTTCCAATTACAGCCATCCGGGAAATCAAGATCTTGAAGAAGTTGCAACATEST: gi|18373677|gb|BJ205255.1|BJ205255
genomic: GCGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGAAAGAAGGGgtatgatgat ... tcgaatgcagTTTCCAATTACAGCCATCCGGGAAATCAAGATCTTGAAGAAGTTGCAACAT
EST: GCGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGAAAGAAGGG TTTCCAATTACAGCCATCCGGGAAATCAAGATCTTGAAGAAGTTGCAACAT
genomic: GCGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGAAAGAAGGGgtatgatgat ... tcgaatgcagTTTCCAATTACAGCCATCCGGGAAATCAAGATCTTGAAGAAGTTGCAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGAAAGAAGGGgtatgatgattttattattattatgtagagtacagcagtagttagtggagagtgttttctaatttctgggctctgaagatatactcatttcacttgtcat
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG