1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTGCAGGACCTCGTTCCTGGGTGCAAGAAAGTTACGGGCAAAGCGGTCATGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAAgtacgtctagcctctctctctctctctctcgttccttccttccttccaattcaggtctagcgtgggagtatatctaggagtaaatcagaacttcgggatgttccatgtcaagctttgatatgcccccaatttgtttcgcag
species | Physcomitrella patens |
transcript | PP1S226_51V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAA CATCTATCAATGAGGCTGGCATCCGTCTGCCCAGGTCACGCGGACATGGCCEST: gi|162178303|gb|FC354709.1|FC354709
genomic: TGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAAgtacgtctag ... tgtttcgcagCATCTATCAATGAGGCTGGCATCCGTGTGCTCAGGTCACGCGGACATGGCC
EST: TGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAA CATCTATCAATGEST: gi|100411682|gb|BY992286.1|BY992286
genomic: TGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAAgtacgtctag ... tgtttcgcagCATCTATCAATG
EST: TGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAA CATCTATCAATGAGGCTGGCATCCGTGTGCTCAGGTCACGCGGACATGGCCEST: gi|162206227|gb|FC382297.1|FC382297
genomic: TGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAAgtacgtctag ... tgtttcgcagCATCTATCAATGAGGCTGGCATCCGTGTGCTCAGGTCACGCGGACATGGCC
EST: TGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAA CATCTATCAATGAGGCTGGCATCCGTCTGCCCAGGTCACGCGGACATGGCC
genomic: TGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAAgtacgtctag ... tgtttcgcagCATCTATCAATGAGGCTGGCATCCGTGTGCTCAGGTCACGCGGACATGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCAGGACCTCGTTCCTGGGTGCAAGAAAGTTACGGGCAAAGCGGTCATGCTCGACGAGATCATCAACTATGTTCAATTCCTCCAGCGCCAAGTCGAAgtacgtctagcctctctctctctctctctcgttccttccttccttccaattcaggtctagcgtgggagtatatctaggagtaaatcagaacttcgggatgttccatgtcaagctttgatatgcccccaatttgtttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA