1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ACGTTCTTGGAGGTGCAGCAGTTACCGAAGAGATTGTTCCTGGGTTTAAGTTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACAgtgagtcttgcccgcatcctcttaataggaatttagggggctctagggtttagggtttaggggctaattactgtaatgtgtctatctattctttgagcga...
species | Physcomitrella patens |
transcript | PP1S224_84V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACA AGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTCEST: gi|100353311|gb|BY964742.1|BY964742
genomic: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACAgtgagtcttg ... tgtttcttagAGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTC
EST: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACA AGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTCEST: gi|208385189|gb|DC911407.1|DC911407
genomic: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACAgtgagtcttg ... tgtttcttagAGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTC
EST: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACA AGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTCEST: gi|18364827|gb|BJ196900.1|BJ196900
genomic: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACAgtgagtcttg ... tgtttcttagAGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTC
EST: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACA AGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTEST: gi|18371663|gb|BJ203265.1|BJ203265
genomic: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACAgtgagtcttg ... tgtttcttagAGAGCTGGATTTGACAAGACATGGACTTAAGCTGCT
EST: TTCTCTANAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACA AGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTCEST: gi|18366095|gb|BJ198173.1|BJ198173
genomic: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACAgtgagtcttg ... tgtttcttagAGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTC
EST: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACA AGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTC
genomic: TTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACAgtgagtcttg ... tgtttcttagAGAGCTGGATTTGACAAGACATGGACTTAAGCTGCTTCCAAGGAACCCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGTTCTTGGAGGTGCAGCAGTTACCGAAGAGATTGTTCCTGGGTTTAAGTTCTCTAGAGCTAGCTATCTTCAAAGTCTGCTGCGACCCGGTATTATACAgtgagtcttgcccgcatcctcttaataggaatttagggggctctagggtttagggtttaggggctaattactgtaatgtgtctatctattctttgagcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC