1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCTGGTGTTGCTCGCAACATGGTGGACAGCATGTCCGTTCCCGTGTTCCGTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtatatcatgctgtctactttgaatttcgaccatattgctattatagcctctatctttagatccttaacgtcgcccgtgctgtcatttctggtg...
species | Physcomitrella patens |
transcript | PP1S223_50V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCAEST: gi|162180018|gb|FC356089.1|FC356089
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
EST: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCAEST: gi|208365828|gb|DC951063.1|DC951063
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
EST: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCAEST: gi|208365900|gb|DC951079.1|DC951079
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
EST: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCAEST: gi|162178403|gb|FC354127.1|FC354127
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
EST: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGGTGTTGCTCGCAACATGGTGGACAGCATGTCCGTTCCCGTGTTCCGTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtatatcatgctgtctactttgaatttcgaccatattgctattatagcctctatctttagatccttaacgtcgcccgtgctgtcatttctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG