1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGGCGTACCGTACTGATGAGGGCAAACCATTGGTATTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctctatccgagtttcatctgttactgtcagcgaagtctaaaaccgctcctctagatcattctagtcttactccccatgaccttcctggtattg...
species | Physcomitrella patens |
transcript | PP1S223_31V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCGT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|67716236|gb|BJ966496.1|BJ966496
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|67703583|gb|BJ963816.1|BJ963816
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCAEST: gi|18348563|gb|BJ180612.1|BJ180612
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|162256780|gb|FC432674.1|FC432674
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|18372779|gb|BJ204381.1|BJ204381
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCCCTTTCAACAATCATAGCATGAAEST: gi|208361604|gb|DC942847.1|DC942847
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|162274186|gb|FC449946.1|FC449946
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|162257990|gb|FC434084.1|FC434084
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|162192506|gb|FC371697.1|FC371697
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|18363244|gb|BJ195316.1|BJ195316
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|162198689|gb|FC373470.1|FC373470
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|67716980|gb|BJ967239.1|BJ967239
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|100405509|gb|BY973712.1|BY973712
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAANCA-TCATAGCATGAEST: gi|100446972|gb|CJ971271.1|CJ971271
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAA-CAATCATAGCATGA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|18361332|gb|BJ193398.1|BJ193398
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|208381144|gb|DC903034.1|DC903034
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAAEST: gi|18367140|gb|BJ199221.1|BJ199221
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
EST: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCAT GGAGTACCTTCCCATGGGGGGTGATATCCCTTTCAACAATCATAGCATGAA
genomic: TTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctc ... gttgtaacagGGAGTACCTTCCCATGGGGGGTGATATCTCTTTCAACAATCATAGCATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGCGTACCGTACTGATGAGGGCAAACCATTGGTATTGGAATGCGTGCGTAAAGCTGAAGAAAAGATTGCCGGTTCCAACTTCATgtaagccctctatccgagtttcatctgttactgtcagcgaagtctaaaaccgctcctctagatcattctagtcttactccccatgaccttcctggtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA