1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttgcgaaaaaactcccgtttttctactaatgtgtccagcgtgattgtttggcatgggtgcaatgcatgagtagtttagagcgatggatataat...
species | Physcomitrella patens |
transcript | PP1S221_46V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGTEST: gi|208362654|gb|DC931047.1|DC931047
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGTEST: gi|208389985|gb|DC938040.1|DC938040
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGTEST: gi|208369068|gb|DC931639.1|DC931639
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGTEST: gi|208362659|gb|DC931052.1|DC931052
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGTEST: gi|208361781|gb|DC935021.1|DC935021
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGTEST: gi|100433963|gb|BY978901.1|BY978901
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGTEST: gi|100386844|gb|BY988113.1|BY988113
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGTEST: gi|208389039|gb|DC937372.1|DC937372
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGTEST: gi|100418818|gb|BY975754.1|BY975754
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
EST: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAG GTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
genomic: GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttg ... taattggcagGTTTGAGGCTGTCATTCACTTCGCGGGTCTGAAGGCTGTGGGAGAAAGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGACCTGTGCAAGGTGGACGACATACAGAAGGTGTTCAAGCTTTACAGgtttggcttgcgaaaaaactcccgtttttctactaatgtgtccagcgtgattgtttggcatgggtgcaatgcatgagtagtttagagcgatggatataat
- - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgaaaaaa