Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGTGAGGCTAATGTGGTGGCTGGTAATGCTCCTGCCGCTCCTCCTGTTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtctgtggagtggttgcattttagattgaagcactgttgatttgaaggtggtgatagcttctgatagctgatgaaattagctttgtcttttgat...

Basic information

species Physcomitrella patens
transcript PP1S219_94V6.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162250292|gb|FC425946.1|FC425946
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|162166620|gb|FC343512.1|FC343512
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|100384135|gb|BY950521.1|BY950521
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|162190655|gb|FC367541.1|FC367541
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|162154906|gb|FC331948.1|FC331948
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|162186428|gb|FC362984.1|FC362984
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|162166262|gb|FC342855.1|FC342855
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|162150373|gb|FC326645.1|FC326645
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|162157382|gb|FC333484.1|FC333484
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|208394292|gb|DC904112.1|DC904112
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|162177008|gb|FC353685.1|FC353685
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
EST: gi|162270868|gb|FC446897.1|FC446897
EST:     TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTG                         GTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT
genomic: TTCCTGCCAAGCCCAGTGCACCTGAGGGCACACCCGCAATTTCTCCGTTGgtacgcgtct ... acggctgcagGTAATGCCCGCTAGGCCACGAAGAAACCGCAGATCTCCAGCTCTCCGCGCT