Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagctcttcagatgtcttatatatatatatatatatatatatatatatatatgttttgggtttcttcgttagggtttcatttttgtctcattggg...

Basic information

species Physcomitrella patens
transcript PP1S219_50V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G030915_T08 (Zea mays), 5'ss of exon 2
TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagctcttcagatgtcttatatatatatatatatatatatatatatatatatgttttgggtttcttcgt-tagggtttcattttt--gtctcattggg--
 |||||||| |||||||| ||||||||||||||||||||       ||||    |   ||  | ||||||||||||||  | |||||   ||| || | || |  |   ||||    | ||  || | | |   ||  |     || ||   | | |||| ||   ||   | | || |  |  || | |    | |  | |   
CCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAAGACTCTCGTATCCAGGACACAGGGTACCAGGgtatgtttttctttgattatcg-atgtttttccgtac-tgcccctacat---tctgtgttgtgaacttgcgcatatatgcatgtatatgtagaccgcgctagtca

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G030915_T07 (Zea mays), 5'ss of exon 2
------TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagctcttcagatgtcttatatatatatatatatatatatatatatatatatgttttgggtttcttcgttagggtttcatttttgtctcattggg
       |||||||| |||||||| ||||||||||||||||||||       ||||    |   ||  | ||||||||||||||  | |||||   ||| || | || |  |   | ||    | ||  |||| |                                                                       
CGTCGACCCTTTCTCTAAGAAGGATTGGTATGACAtcaaggcaccgtcggtgttcagtgtgcgcaacatcgggaagactctcgtatccaggacacagggtaccagggtatgtttttttttgactatcg-atatttt----------------------------------------------------------------------

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G030915_T03 (Zea mays), 5'ss of exon 2
TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagctcttcagatgtcttatatatatatatatatatatatatatatatatatgttttgggtttcttcgttagggt---ttcatttttgtctcattggg--
 |||||||| |||||||| ||||||||||||||||||||       ||||    |   ||  | ||||||||||||||  | |||||   ||| || | || |  |   | ||    | ||  |||| | |   ||  |     || ||   | | |||| ||   ||   | |    |    |  || |    | |  | |   
CCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAAGACTCTCGTATCCAGGACACAGGGTACCAGGgtatgtttttttttgactatcg-atattttttcgtac-tgcccctacat---tgtgtgttgtgaacttgcgcatatatgcatgtgtatgtagaccgcgctagtca

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G145258_T01 (Zea mays), 5'ss of exon 2
TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagctcttcagatgtct-tatatatatata-tatatatatatatatatatatatgttttgggtttcttcgttagggtttcatttttgtc-tcattggg
 |||||||| |||||||| ||||||||||||||||||||       ||||    |   ||  | ||||||||||||||  | |||||   ||| || | || |  |   |||| |  | ||  | | | |   || |     ||  |       |    | | |  |  | | | |   |    |  |       | |||   
CCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAAGACTCTCGTATCCAGGACACAGGGTACCAGGgtatgtttttctttaattctcgatgttttttcgtactgcccctacgttctgtgttgagagatatatgcatgtccatgtagaccgcgctagcaaggttatt---

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G030915_T05 (Zea mays), 5'ss of exon 2
------TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagctcttcagatgtcttatatatatatatatatatatatatatatatatatgttttgggtttcttcgttagggtttcatttttgtctcattggg
       |||||||| |||||||| ||||||||||||||||||||       ||||    |   ||  | ||||||||||||||  | |||||   ||| || | || |  |   | ||    | ||  |||| | |   ||  |     || ||   | | |||| ||   ||                                
CGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGgaagactctcgtatccaggacacagggtaccagggtatgtttttttttgactatcg-atattttttcgtac-tgcccctacat---tgtgtgttgtgaacttgcg-----------------------------

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G013457_T01 (Zea mays), 5'ss of exon 2
TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagctcttcagatgtcttatatatatatatatatatatatatatatatatatgttttgggtttcttcgttagggtttcatttttgtctcattggg-----
||| ||||| |||||||||||||||||||||||||| ||      |||||    |   ||  | ||||||||||||||  | |||||   ||| || | || |      |||| | || ||  |  | | ||  ||   |    ||  | |   | || | ||    |   |||   ||||  || | | | |     |      
TCCCTTCTCTAAGAAGGACTGGTATGACATCAAGGCCCCATCGGTCTTCAGTGTGCGCAACATTGGGAAGACTCTCGTGTCCAGGACACAGGGTACCAGGgtatggttttctttaaatctcg-aggtttttacgtac-cacccctacgttt---tgtggtgtgaagatgggcgtataggttctatgtctatgtagaccgccgtag

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 5'ss of exon 2
TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagctcttcagatgtcttatatatatatatatatatatatatatatatatatgttttgggtttcttcgttagggtttcatttttgtctcattggg
 || ||| |||||||||||||||||||||||||||| |||| ||  |||||       ||  |||| ||||| || || || |||||   ||| || ||||  |         | |    |  |   || |    |      |  |  |   |        ||  || || |      |                     
CCCCTTCGCCAAGAAGGACTGGTATGACATCAAGGCGCCCACCATGTTCACTGTCCGCAACGTGGGCAAGACCCTGGTGACCAGGACGCAGGGTACCAAGgtgagcgagggggcggcgcccgcac-catctccgcaggccgctgcagttgctt---caccatgatttcctgcaacgcag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162238339|gb|FC415881.1|FC415881
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162219262|gb|FC395258.1|FC395258
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162266508|gb|FC442544.1|FC442544
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18367508|gb|BJ199591.1|BJ199591
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162263546|gb|FC439575.1|FC439575
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18365501|gb|BJ197578.1|BJ197578
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|67571923|gb|BJ944747.1|BJ944747
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162263545|gb|FC439574.1|FC439574
EST:     CGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162260761|gb|FC435413.1|FC435413
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162270425|gb|FC447541.1|FC447541
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162266098|gb|FC441847.1|FC441847
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|100445211|gb|BY982840.1|BY982840
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162280003|gb|FC456189.1|FC456189
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|67699231|gb|BJ959464.1|BJ959464
EST:     TCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: TCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|208390671|gb|DC937827.1|DC937827
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162259533|gb|FC435460.1|FC435460
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18364001|gb|BJ196074.1|BJ196074
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162268892|gb|FC445714.1|FC445714
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|208386756|gb|DC929202.1|DC929202
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162258378|gb|FC434929.1|FC434929
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162252182|gb|FC425860.1|FC425860
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|67695290|gb|BJ955523.1|BJ955523
EST:     TAGGACCGCGGGAACTAAG                         ATTGCNTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: TAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18373981|gb|BJ205559.1|BJ205559
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162263260|gb|FC439068.1|FC439068
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162276244|gb|FC452598.1|FC452598
EST:     AGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: AGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18371609|gb|BJ203211.1|BJ203211
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|67575749|gb|BJ948573.1|BJ948573
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18356012|gb|BJ188071.1|BJ188071
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162260760|gb|FC435412.1|FC435412
EST:     GACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGG-TGNAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGA
genomic: GACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTG-AAGGGACGTGTGTTCGAGGTCTCGTTAGCCGA
EST: gi|67570168|gb|BJ942992.1|BJ942992
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162259534|gb|FC435461.1|FC435461
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18356228|gb|BJ188287.1|BJ188287
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18360719|gb|BJ192782.1|BJ192782
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18368054|gb|BJ200139.1|BJ200139
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18347464|gb|BJ179510.1|BJ179510
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162269620|gb|FC444851.1|FC444851
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|208365423|gb|DC950890.1|DC950890
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|18373990|gb|BJ205568.1|BJ205568
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
EST: gi|162270426|gb|FC447542.1|FC447542
EST:     CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAG                         ATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC
genomic: CGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 155

TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagct ... gatgcgacagATTGCCTCCGATGGGTTGAAGGGACGTGTGTTCGAGGTCTCGTTAGCCGACTTGCAGAATGATGAAGATCAGGCTTTCCGCAAAATCAAGCTGAGGGCCG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTTTCTCCAAGAAGGACTGGTATGACATCAAGGCACCCAACACCTTCACGCAGAAGAATTTGGGGAAGACTCTCGTCACTAGGACCGCGGGAACTAAGgcaattagctcttcagatgtcttatatatatatatatatatatatatatatatatatgttttgggtttcttcgttagggtttcatttttgtctcattggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA