1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGGGCGAGAGTTTGGCGAAGTCGCGATTGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTGgtagcgtgacattcctttgctccttgacgtaactgcaattcaaatatgccttgctcggattgtagataatggatcctacgtttcttatgaacgaatgcattgtcggcaggctttagtgtgttctcgaaaccttactgtgtggttgctgtggcatgctcgttagactcatattgccctctgttcacttttcag
species | Physcomitrella patens |
transcript | PP1S215_91V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTG GTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATCEST: gi|208358338|gb|DC943197.1|DC943197
genomic: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTGgtagcgtgac ... cacttttcagGTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATC
EST: TGAAATAGTTTGGTCTCCCGCTCTTTCGTTCGCTGGAAAAGAAGTTTCTG GTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATCEST: gi|100427993|gb|BY959229.1|BY959229
genomic: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTGgtagcgtgac ... cacttttcagGTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATC
EST: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTG GTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATCEST: gi|100395351|gb|BY953694.1|BY953694
genomic: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTGgtagcgtgac ... cacttttcagGTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATC
EST: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTG GTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATCEST: gi|18369564|gb|BJ201652.1|BJ201652
genomic: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTGgtagcgtgac ... cacttttcagGTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATC
EST: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTG GTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATCEST: gi|18372330|gb|BJ203932.1|BJ203932
genomic: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTGgtagcgtgac ... cacttttcagGTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATC
EST: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTG GTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATCEST: gi|162262142|gb|FC437911.1|FC437911
genomic: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTGgtagcgtgac ... cacttttcagGTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATC
EST: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTG GTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATC
genomic: TGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTGgtagcgtgac ... cacttttcagGTATTTTGTCATGGCTCCATGCATTCCTGGTTCTGCCACAAGCGAGTTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGCGAGAGTTTGGCGAAGTCGCGATTGAAATAGTTTGGTCTCCCGCTCTTTTGTTCGCTGGAAAAGAAGTTTCTGgtagcgtgacattcctttgctccttgacgtaactgcaattcaaatatgccttgctcggattgtagataatggatcctacgtttcttatgaacgaatgcattgtcggcaggctttagtgtgttctcgaaaccttactgtgtggttgctgtggcatgctcgttagactcatattgccctctgttcacttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT