1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAAAACACTCTGAAGAGACTTGGTGTAAATACTATTCCTGGCATTGAGGAGGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcactggactttatccacctacaataaaatacataaagaacttgttcgatatatttgaagtttctcccatttacgattatgatgtaaatgcttct...
species | Physcomitrella patens |
transcript | PP1S213_68V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|67709655|gb|BJ965471.1|BJ965471
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162248112|gb|FC419701.1|FC419701
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162261267|gb|FC437284.1|FC437284
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162245442|gb|FC421344.1|FC421344
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162201863|gb|FC377797.1|FC377797
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162201226|gb|FC378461.1|FC378461
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|67722793|gb|BJ973052.1|BJ973052
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|37850633|gb|BJ608641.1|BJ608641
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|67710220|gb|BJ965894.1|BJ965894
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|37836700|gb|BJ594708.1|BJ594708
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|18369319|gb|BJ201405.1|BJ201405
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162209748|gb|FC385682.1|FC385682
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162201862|gb|FC377796.1|FC377796
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCATTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162279241|gb|FC455788.1|FC455788
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|67723731|gb|BJ973990.1|BJ973990
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|67704278|gb|BJ964511.1|BJ964511
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCEST: gi|162279606|gb|FC455358.1|FC455358
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCC
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162279240|gb|FC455787.1|FC455787
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|37839915|gb|BJ597923.1|BJ597923
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|18362681|gb|BJ194752.1|BJ194752
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162201020|gb|FC378151.1|FC378151
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162248113|gb|FC419702.1|FC419702
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|100449281|gb|CJ973580.1|CJ973580
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162274339|gb|FC450307.1|FC450307
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|37844027|gb|BJ602035.1|BJ602035
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162262878|gb|FC438764.1|FC438764
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|18357333|gb|BJ189392.1|BJ189392
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|67724158|gb|BJ974417.1|BJ974417
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|19789623|gb|BQ041415.1|BQ041415
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162205674|gb|FC381889.1|FC381889
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|67724455|gb|BJ974714.1|BJ974714
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|208344777|gb|DC912611.1|DC912611
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162271998|gb|FC448416.1|FC448416
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162279605|gb|FC455357.1|FC455357
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|162205675|gb|FC381890.1|FC381890
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|18358769|gb|BJ190828.1|BJ190828
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGAEST: gi|6227472|gb|AW156071.1|AW156071
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: GTGTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GT-TAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAACACTCTGAAGAGACTTGGTGTAAATACTATTCCTGGCATTGAGGAGGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcactggactttatccacctacaataaaatacataaagaacttgttcgatatatttgaagtttctcccatttacgattatgatgtaaatgcttct
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