1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGTGTCCCCTCGGGACAGCCACTGCCTGGCATAGGGGCTAGACCACGAGTGCGAGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGGgtatgagtattcttgatttattgtcttttctgatgtttttaaaattaccttctcagggagttgcatggcgatgataggaggcactatgtcgatttatgat...
species | Physcomitrella patens |
transcript | PP1S209_22V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCGAGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGG CTTCGCCGAGAGAGAATCGCTGAGCGCATGAAAGCCTTGCAAGAACTTGTTEST: gi|162193688|gb|FC369174.1|FC369174
genomic: TGCGAGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGGgtatgagtat ... tggataatagCTTCGCCGAGAGAGAATCGCTGAGCGCATGAAAGCCTTGCAAGAACTTGTT
EST: TGCGAGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGG CTTCGCCGAGAGAGAATCGCTGAGCGCATGAAAGCCTTGCAAGAACTTGTTEST: gi|208399073|gb|DC904482.1|DC904482
genomic: TGCGAGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGGgtatgagtat ... tggataatagCTTCGCCGAGAGAGAATCGCTGAGCGCATGAAAGCCTTGCAAGAACTTGTT
EST: AGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGG CTTCGCCGAGAGAGAATCGCTGAGCGCATGAAAGCCTTGCAAGAACTTGTTEST: gi|162249127|gb|FC421522.1|FC421522
genomic: AGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGGgtatgagtat ... tggataatagCTTCGCCGAGAGAGAATCGCTGAGCGCATGAAAGCCTTGCAAGAACTTGTT
EST: TGCGAGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGG CTTCGCCGAGAGAGAATCGCTGAGCGCATGAAAGCCTTGCAAGAACTTGTT
genomic: TGCGAGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGGgtatgagtat ... tggataatagCTTCGCCGAGAGAGAATCGCTGAGCGCATGAAAGCCTTGCAAGAACTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGTCCCCTCGGGACAGCCACTGCCTGGCATAGGGGCTAGACCACGAGTGCGAGCACGTCGTGGTCAAGCAACTGATCCGCACAGTATTGCTGAACGGgtatgagtattcttgatttattgtcttttctgatgtttttaaaattaccttctcagggagttgcatggcgatgataggaggcactatgtcgatttatgat
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