1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGGTAGGAATGTCTTCCAGACCGCCACAAAGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttcattacctggcgggttaagtctgcataatcatgtatggtgagcgacttagatttgtggatagttctgagttttagggtttgagaagaatta...
species | Physcomitrella patens |
transcript | PP1S200_25V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|162248250|gb|FC423674.1|FC423674
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCCTCTTCACAGGCACEST: gi|162232416|gb|FC408837.1|FC408837
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|162207270|gb|FC383307.1|FC383307
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|67507470|gb|BJ940352.1|BJ940352
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|67578509|gb|BJ950676.1|BJ950676
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|67701409|gb|BJ961642.1|BJ961642
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|18326264|gb|BJ158263.1|BJ158263
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|67701253|gb|BJ961486.1|BJ961486
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|162231864|gb|FC408730.1|FC408730
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|162204474|gb|FC381702.1|FC381702
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|162277018|gb|FC453740.1|FC453740
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|67578368|gb|BJ950535.1|BJ950535
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|162225615|gb|FC401549.1|FC401549
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|67579273|gb|BJ951404.1|BJ951404
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGNCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATNTGAGACCCACGGAGTACAAAACCTCTNGTCTTCACAGGCACEST: gi|67507937|gb|BJ940812.1|BJ940812
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|162244684|gb|FC423468.1|FC423468
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|18372122|gb|BJ203724.1|BJ203724
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|67579232|gb|BJ951377.1|BJ951377
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|37843088|gb|BJ601096.1|BJ601096
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|37842322|gb|BJ600330.1|BJ600330
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: GGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|37851424|gb|BJ609432.1|BJ609432
genomic: -GAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: GGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|67578728|gb|BJ950895.1|BJ950895
genomic: -GAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGNCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCNCGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|67572937|gb|BJ945761.1|BJ945761
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCACEST: gi|162207271|gb|FC383308.1|FC383308
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
EST: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGG ATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
genomic: AGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttc ... gtcattgcagATTCCTCATCTGAGACCCACGGAGTACAAAACCTCTCGTCTTCACAGGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTAGGAATGTCTTCCAGACCGCCACAAAGAGGGCAGCTGGGCCGAAGTGTCCAGTGTCTGGAAAACGTATTGCTGGGgtgagttttcattacctggcgggttaagtctgcataatcatgtatggtgagcgacttagatttgtggatagttctgagttttagggtttgagaagaatta
- - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - CAGCTG