Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttctgttctttgaaagtgtgctaactttccactgcttccccctctcaacatagggttttcattgatactatgatgtctctcacgtttgagtgtagctaagagagactagcaggagtgtgaggattttgtggtcctaactctggagcttttacttcaaatcgtgaatgcag

Basic information

species Physcomitrella patens
transcript PP1S1_489V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162241794|gb|FC418049.1|FC418049
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|18354554|gb|BJ186611.1|BJ186611
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|22133059|gb|BQ827524.1|BQ827524
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|37835950|gb|BJ593962.1|BJ593962
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGNTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|7147721|gb|AW509586.1|AW509586
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|67699814|gb|BJ960047.1|BJ960047
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|7286496|gb|AW598983.1|AW598983
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|208379526|gb|DC911137.1|DC911137
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|37826607|gb|BJ584619.1|BJ584619
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162253359|gb|FC429785.1|FC429785
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|37840235|gb|BJ598243.1|BJ598243
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162207763|gb|FC383848.1|FC383848
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|18362518|gb|BJ194588.1|BJ194588
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|37828619|gb|BJ586631.1|BJ586631
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGNTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|37841368|gb|BJ599376.1|BJ599376
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|67704082|gb|BJ964315.1|BJ964315
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|18373127|gb|BJ204729.1|BJ204729
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162206828|gb|FC382690.1|FC382690
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|208400306|gb|DC924944.1|DC924944
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|37829418|gb|BJ587430.1|BJ587430
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|18348983|gb|BJ181032.1|BJ181032
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162249736|gb|FC425615.1|FC425615
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162201613|gb|FC378275.1|FC378275
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|67572130|gb|BJ944954.1|BJ944954
EST:     TCNAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|37843649|gb|BJ601657.1|BJ601657
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTNGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|37828742|gb|BJ586754.1|BJ586754
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162203065|gb|FC380137.1|FC380137
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162209802|gb|FC385736.1|FC385736
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|67576303|gb|BJ949127.1|BJ949127
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|208346684|gb|DC913330.1|DC913330
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|18363018|gb|BJ195090.1|BJ195090
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|19790251|gb|BQ041774.1|BQ041774
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162233066|gb|FC408473.1|FC408473
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162219025|gb|FC394920.1|FC394920
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|67695496|gb|BJ955729.1|BJ955729
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|37839792|gb|BJ597800.1|BJ597800
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162211961|gb|FC388041.1|FC388041
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|67573978|gb|BJ946802.1|BJ946802
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162240218|gb|FC418345.1|FC418345
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162260996|gb|FC437416.1|FC437416
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162232000|gb|FC409074.1|FC409074
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162230936|gb|FC407191.1|FC407191
EST:     CAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: CAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|208379596|gb|DC927093.1|DC927093
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|22132938|gb|BQ827449.1|BQ827449
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|18349777|gb|BJ181827.1|BJ181827
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162253358|gb|FC429784.1|FC429784
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|162212786|gb|FC388586.1|FC388586
EST:     GTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: GTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|18349657|gb|BJ181707.1|BJ181707
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
EST: gi|18364283|gb|BJ196356.1|BJ196356
EST:     TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG                         TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC
genomic: TCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 168

CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttc ... gtgaatgcagTTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAGgtgtagtttctgttctttgaaagtgtgctaactttccactgcttccccctctcaacatagggttttcattgatactatgatgtctctcacgtttgagtgtagctaagagagactagcaggagtgtgaggattttgtggtcctaactctggagcttttacttcaaatcgtgaatgcag

- - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - -  GCAAGA