1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATGTCTACCTGAGAATGCACAAGGGCCAAACTATGGAGATGATCAGCCCTGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagcatgaggttctaaagttacgcttcatttgatgaggagagtggaatttttgggagaactatttcatgcactgcttgtagtcgagcggatgatttcattgttgaggcttgccctgatgcataggtaggtgatactttgtgtag
species | Physcomitrella patens |
transcript | PP1S199_23V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGEST: gi|37852535|gb|BJ610543.1|BJ610543
genomic: GAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCAT-CCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTG
EST: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGAEST: gi|37837061|gb|BJ595069.1|BJ595069
genomic: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGA
EST: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGAEST: gi|37848004|gb|BJ606012.1|BJ606012
genomic: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGA
EST: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGAEST: gi|37830821|gb|BJ588833.1|BJ588833
genomic: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGA
EST: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGAEST: gi|18359130|gb|BJ191190.1|BJ191190
genomic: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGA
EST: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGAEST: gi|18351476|gb|BJ183528.1|BJ183528
genomic: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGA
EST: TGAGCTTTTANAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGAEST: gi|18371814|gb|BJ203416.1|BJ203416
genomic: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGA
EST: TGAGCTTTTANAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGAEST: gi|18367505|gb|BJ199588.1|BJ199588
genomic: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGA
EST: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCCGTGGTATAATCTGEST: gi|208346849|gb|DC913088.1|DC913088
genomic: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACC-GTGGTATAATCTG
EST: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAG GTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGA
genomic: TGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagc ... ctttgtgtagGTAATAAACTCAACAACTTGGATGTTGTTTACACACCGTGGTATAATCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTCTACCTGAGAATGCACAAGGGCCAAACTATGGAGATGATCAGCCCTGAGCTTTTAGAAGATTGTGCTCAGCTCGTGAAGGCCAACTCCATCCAAGgtatgttagcatgaggttctaaagttacgcttcatttgatgaggagagtggaatttttgggagaactatttcatgcactgcttgtagtcgagcggatgatttcattgttgaggcttgccctgatgcataggtaggtgatactttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC