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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATTTCTTCTCCATGgctggagagggtgaggatgtccagcctttggtgtgcgacaatggatccggaatggtgaaggtatgatattaactgttttgatgatgcatttgtattctcc...

Basic information

species Physcomitrella patens
transcript PP1S198_157V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S198_157V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 1
AGTATTTCTTCTCCATGgctggagagggtgaggatgtccagcctttggtgtgcgacaatggatccggaatggtgaaggtatgatattaactgttttgatgatgcatttgtattctcc----------------
                       | ||  || ||  |||||||  |||||||||||||||||||||| ||||| |||||  | |  |  |    ||  |  || ||||  || |                   
--------------------ATGGCGGAGGAAGAAATCCAGCCCCTGGTGTGCGACAATGGATCCGGGATGGTCAAGgtgcgctcctggcgcggtttcttgtggattttgatccggggggtgtgttcttgcag

upper sequence: PP1S198_157V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 1
AGTATTTCTTCTCCATGgctggagagggtgaggatgtccagcctttggtgtgcgacaatggatccggaatggtgaaggtatgatattaactgttttgatgatgcatttgtattctcc----------------
                       | ||  || ||  |||||||  |||||||||||||||||||||| ||||| |||||  | |  |  |    ||  |  || ||||  || |                   
--------------------ATGGCGGAGGAAGAAATCCAGCCCCTGGTGTGCGACAATGGATCCGGGATGGTCAAGgtgcgctcctggcgcgatttcttgtggattttgatccggggggtgtgtttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100365992|gb|BY967241.1|BY967241
EST:     ATACTAAGAGTATTTCTTCTCCATG                         GCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: ATACTAAGAGTATTTCTTCTCCATGgctggagagg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG