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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGCTCTTTTCTGTACATGCGCATCATGAATGTGTATGTAGTCGCTGTTGTTAGCAGCAATGCCAATGCCGCATGCGCTTTCAAATTCATGGTTGAGgtatattctgtgagcaagctctttcaattacgatttaaaactttttaaaccactttatttctttagacccagcttgggccggtgtgagatccaggttcaa...

Basic information

species Physcomitrella patens
transcript PP1S197_28V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S197_28V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 2
AGGATGCTCTTTTCTGTACATGCGCATCATGAATGTGTATGTAGTCGCTGTTGTTAGCAGCAATGCCAATGCCGCATGCGCTTTCAAATTCATGGTTGAGgtatattctgtgagcaagctctttcaattacgatttaaaact--ttttaaaccactttatttctt-tagacccagcttgggccggtgtgagatccaggttcaa-
 |||||||||||  | |||||| | ||||  ||||| ||  | |||  ||||||||||| ||||||||||| ||| ||||||||||| ||  | |||||||||    ||||     | ||  ||    | |   ||     |   |||   | |  |   || |  |  | || | || ||  | ||| |       ||| || 
TGGATGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATTGTCATTGTTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgta----ctgtagctcaccttgttagggtgctgcttgtgcatgactttcttctatctagcttataattaatcctgttttggttgttgttaatgttttgttaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208358886|gb|DC935216.1|DC935216
EST:     TTGTTAGCAGCAATGCCAATGCCGCATGCGCTTTCAAATTCATGGTTGAG                         ACAGTCGCTCTTTTCAAGTCGTATTTCGGAAGGGCCGTTCGATGAANATGC
genomic: TTGTTAGCAGCAATGCCAATGCCGCATGCGCTTTCAAATTCATGGTTGAGgtatattctg ... atggtgccagACAGTCGCTCTTTTCAAGTCGTATTTCGGAGGGGC-GTTCGATGAAGATGC