1 5' 3' | 2 5' 3' | 3 5' 3' |
ACGATTTAGCGATCATCTAGAAAGTATCAAATTCATTTGTAAGGATTTCTGGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAAgtatgttcccattggagccacgtttgcgttcccaaacgcattggatactcttttttatacgttatacttaggcattttcggtactcacttgtgaaatttg...
species | Physcomitrella patens |
transcript | PP1S190_65V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAA GGTGTGTTTGTATTGCAGGACAACCGTTTCAGATGGCTTACTCGTATTTCAEST: gi|208360113|gb|DC950156.1|DC950156
genomic: GGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAAgtatgttccc ... tgctgtgtagGGTGTGTTTGTATTGCAGGACAACCGTTTCAGATGGCTTACTCGTATTTCA
EST: GGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAA GGTGTGTTTGTATTGCAGGACAACCGTTTCAGATGGCTTACTCGTATTTCAEST: gi|208355940|gb|DC953902.1|DC953902
genomic: GGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAAgtatgttccc ... tgctgtgtagGGTGTGTTTGTATTGCAGGACAACCGTTTCAGATGGCTTACTCGTATTTCA
EST: GGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAA GGTGTGTTTGTATTGCAGGACAACCGTTTCAGATGGCTTACTCGTATTTCAEST: gi|208361588|gb|DC950304.1|DC950304
genomic: GGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAAgtatgttccc ... tgctgtgtagGGTGTGTTTGTATTGCAGGACAACCGTTTCAGATGGCTTACTCGTATTTCA
EST: GGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAA GGTGTGTTTGTATTGCAGGACAACCGTTTCAGATGGCTTACTCGTATTTCA
genomic: GGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAAgtatgttccc ... tgctgtgtagGGTGTGTTTGTATTGCAGGACAACCGTTTCAGATGGCTTACTCGTATTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGATTTAGCGATCATCTAGAAAGTATCAAATTCATTTGTAAGGATTTCTGGGCGGAGGTGTTTAAAAAGCAAGTCGACAATCTGAAGACAAATCATAAAgtatgttcccattggagccacgtttgcgttcccaaacgcattggatactcttttttatacgttatacttaggcattttcggtactcacttgtgaaatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA