1 5' 3' | 2 5' 3' | 3 5' 3' |
AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagtatatcgtgtgatgttttgcagttaagtcgacttgcttcgcaaatatatggttaattcgcattgttagatgtgttagttctgcaaatctaggtatgagtcttggagactgtatgtgacgaatggttatgttttgatctgggatggcag
species | Physcomitrella patens |
transcript | PP1S18_19V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG GCAAGGCCGAGGGCAAGCCTGATGCTCCCTTCAGTTTTGTTGATGGCGACTEST: gi|15261911|gb|BI437221.1|BI437221
genomic: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagta ... gggatggcagGCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACT
EST: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG GCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACTEST: gi|162250643|gb|FC428234.1|FC428234
genomic: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagta ... gggatggcagGCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACT
EST: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG GCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACTEST: gi|67508436|gb|BJ941303.1|BJ941303
genomic: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagta ... gggatggcagGCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACT
EST: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG GCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACTEST: gi|18347569|gb|BJ179616.1|BJ179616
genomic: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagta ... gggatggcagGCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACT
EST: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG GCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACTEST: gi|162213505|gb|FC389377.1|FC389377
genomic: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagta ... gggatggcagGCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACT
EST: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG GCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACTEST: gi|18366809|gb|BJ198888.1|BJ198888
genomic: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagta ... gggatggcagGCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACT
EST: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG GCAAGGCCGAGGGCAAGCCTGATGCTACCCTTCAGTTTTGTTGATGGCGACEST: gi|162213504|gb|FC389376.1|FC389376
genomic: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagta ... gggatggcagGCAAGGCCGAGGGCAAGCCTGATGCTACC-TTCAGTTTTGTTGATGGCGAC
EST: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG GCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACT
genomic: TGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagta ... gggatggcagGCAAGGCCGAGGGCAAGCCTGATGCTACCTTCAGTTTTGTTGATGGCGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGGgtgagcagtatatcgtgtgatgttttgcagttaagtcgacttgcttcgcaaatatatggttaattcgcattgttagatgtgttagttctgcaaatctaggtatgagtcttggagactgtatgtgacgaatggttatgttttgatctgggatggcag
- - - - - TGAAGA
- - - - - - AAGAGG
- - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - TTGAAG