1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGTGACATTCTGCCATCAGGAGAGTGGGCTGAGAACTTCTCATTGTTAAATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagcttctcaagttttgtttgttcgtgtatttcgtgtagaattttgttccttggtacctaaataatagtgttgtcgcaacag
species | Physcomitrella patens |
transcript | PP1S189_99V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAG GCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACTEST: gi|100439010|gb|BY961915.1|BY961915
genomic: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagct ... gtcgcaacagGCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACT
EST: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAG GCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACTEST: gi|18370243|gb|BJ201845.1|BJ201845
genomic: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagct ... gtcgcaacagGCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACT
EST: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAG GCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACTEST: gi|18370180|gb|BJ201782.1|BJ201782
genomic: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagct ... gtcgcaacagGCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACT
EST: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAG GCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACTEST: gi|100417562|gb|BY975543.1|BY975543
genomic: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagct ... gtcgcaacagGCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACT
EST: ATTATGAGGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAG GCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACTEST: gi|100378927|gb|BY986487.1|BY986487
genomic: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagct ... gtcgcaacagGCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACT
EST: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAG GCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACTEST: gi|162228632|gb|FC405452.1|FC405452
genomic: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagct ... gtcgcaacagGCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACT
EST: TGTCGAAATACTATGAGCATATTCTATTCAAACCAGAG GCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACTEST: gi|208391806|gb|DC942340.1|DC942340
genomic: TGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagct ... gtcgcaacagGCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACT
EST: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAG GCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACT
genomic: ATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagct ... gtcgcaacagGCACAACCGTCTACACACCTCGCAGATATAATGTCCCGAACCATCATCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGACATTCTGCCATCAGGAGAGTGGGCTGAGAACTTCTCATTGTTAAATTATGAAGATTTGTCGAAATACTATGAGCATATTCTATTCAAACCAGAGgtacgtagcttctcaagttttgtttgttcgtgtatttcgtgtagaattttgttccttggtacctaaataatagtgttgtcgcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA