1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGAAAACTTTGCGTCAGGTCTTGTGGCACTTGGTCATAAGAAAGGGGAAAGGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAGgtaaggctgttgtgcgatttggctgcgtacttactgttgtcgaatcatagcaatggataatcgtcaatactctcctttttttatgttgcagcaagtacagttcaaaagaattgaaaatctgttcagtgacacttcaatttttaagattctagttctgatcttattgcattggttggacgtttgttcag
species | Physcomitrella patens |
transcript | PP1S186_65V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAG GCATGCTTTCGGCAAAACTTTCA-GTTGTCACAGTCTATGCTTCATTGGGAEST: gi|100423981|gb|BY976612.1|BY976612
genomic: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAGgtaaggctgt ... gtttgttcagGCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGA
EST: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAG GCATGCTTTCGGCAAEST: gi|162257528|gb|FC433558.1|FC433558
genomic: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAGgtaaggctgt ... gtttgttcagGCATGCTTTCGGCAA
EST: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAG GCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGAEST: gi|162275893|gb|FC451454.1|FC451454
genomic: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAGgtaaggctgt ... gtttgttcagGCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGA
EST: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAG GCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGAEST: gi|162255457|gb|FC431871.1|FC431871
genomic: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAGgtaaggctgt ... gtttgttcagGCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGA
EST: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAG GCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGAEST: gi|162197911|gb|FC373653.1|FC373653
genomic: GGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAGgtaaggctgt ... gtttgttcagGCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGA
EST: GCTGAATGGCTTCTTGGTGCTGAG GCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGAEST: gi|18367296|gb|BJ199378.1|BJ199378
genomic: GCTGAATGGCTTCTTGGTGCTGAGgtaaggctgt ... gtttgttcagGCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGA
EST: CTGAATGGCTTCTTGGTGCTGAG GCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGA
genomic: CTGAATGGCTTCTTGGTGCTGAGgtaaggctgt ... gtttgttcagGCATGCTTTCGGCAAAACTTTCAAGTTGTCACAGTCTATGCTTCATTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAACTTTGCGTCAGGTCTTGTGGCACTTGGTCATAAGAAAGGGGAAAGGGTCGCTATGTTTGCTGAAACTCGAGCTGAATGGCTTCTTGGTGCTGAGgtaaggctgttgtgcgatttggctgcgtacttactgttgtcgaatcatagcaatggataatcgtcaatactctcctttttttatgttgcagcaagtacagttcaaaagaattgaaaatctgttcagtgacacttcaatttttaagattctagttctgatcttattgcattggttggacgtttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA