Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttcacaagtctcataagaaagtcagaaggtgattagatgatcggtgctatttcttttcgttgagacttacctcactcataaattgtattcaag...

Basic information

species Physcomitrella patens
transcript PP1S184_111V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G022619_T02 (Zea mays), 5'ss of exon 2
TGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttcacaagtctcataagaaagtcagaaggtgattagatgatcggtgctatttcttttcgttgagacttacctcactcataaattgtattcaag
|||||||||| || || || ||  | ||| |||||  |||||||   |||||||||||| | ||||| || || || || |||||||||||||||||||||| |  |  |  |   |         |  |      |   |   || |   | |  || | | |   |||   |  | ||   | |   |||  | ||  
TGGTGGGTCGCGCGCTGCCGACCCCGACCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACTAACGAGGTTCGCGCCAAGTCGAAGTTCTGgt-cagtgccgtacaccctggggcttatgctaggattctctgattgtttttttccgttgcgtatttctgacggtggcgtcttgcttgc-ttgcgtgcag-

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 2
TGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgt----tttcacaa----gtctcataagaaagtcagaaggtgattagatgatcggtgctatttcttttcgttgagacttacctcactcataaattgtattcaag
| |||||  | || |||||  | |  | | |||||   || |||   |||||||||||| | |||||||||||||| || |||||||| || ||||||||||| ||    | | | ||    ||||        ||| |     ||||| | | || ||    |  | ||    | |||  ||   |   ||  |||| |        
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtgggatatgataatgatgtctggatttgtagttattgtttgattgg-taattgggttcaggttttgagttggagttttggtttgatctgaaatag--------

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 2
TGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgtttt-cacaagtctcataagaaagtcagaaggtgattagatgatcggtgcta---ttt---cttttcgtt-gagacttacctcactcataaattgtattcaag
| |||||  | || |||||  | |  ||| |||||   || |||   |||||||||||| | ||||| || ||||| || |||||||| |||||||||||||| ||     || |   | ||  |    |  |  ||| |||   | || |||  ||   ||     |||  ||| | || ||   |   ||  |||| |        
TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtgggatacgataatgatctgtggatttgt-ggttattgtttaattggtaataaggttcgggttttgagttagggatttggtttgatctgaaatag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162224696|gb|FC401944.1|FC401944
EST:     GAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: GAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67697394|gb|BJ957627.1|BJ957627
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|15261745|gb|BI437055.1|BI437055
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162266001|gb|FC443394.1|FC443394
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162208118|gb|FC384573.1|FC384573
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|15728900|gb|BI741035.1|BI741035
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|19790852|gb|BQ042089.1|BQ042089
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|15730159|gb|BI741705.1|BI741705
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|15729272|gb|BI741231.1|BI741231
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162273888|gb|FC450027.1|FC450027
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67703295|gb|BJ963528.1|BJ963528
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162267613|gb|FC443395.1|FC443395
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162217376|gb|FC392844.1|FC392844
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|19783856|gb|BQ040081.1|BQ040081
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162261334|gb|FC437767.1|FC437767
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|18328473|gb|BJ160478.1|BJ160478
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162218715|gb|FC394265.1|FC394265
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162252640|gb|FC428671.1|FC428671
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162262546|gb|FC439745.1|FC439745
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|15728980|gb|BI741076.1|BI741076
EST:     CATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67728138|gb|BJ978397.1|BJ978397
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGTTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67700094|gb|BJ960327.1|BJ960327
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67576562|gb|BJ949386.1|BJ949386
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162238901|gb|FC415091.1|FC415091
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|7584280|gb|AW700176.1|AW700176
EST:     TGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: TGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162208119|gb|FC384574.1|FC384574
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|6102500|gb|AW126970.1|AW126970
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162245564|gb|FC423286.1|FC423286
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162269520|gb|FC445076.1|FC445076
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|208354954|gb|DC914218.1|DC914218
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162245565|gb|FC423287.1|FC423287
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67574005|gb|BJ946829.1|BJ946829
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|15729249|gb|BI741219.1|BI741219
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|18336702|gb|BJ168725.1|BJ168725
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162265925|gb|FC442928.1|FC442928
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67720373|gb|BJ970632.1|BJ970632
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|37848514|gb|BJ606522.1|BJ606522
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|15727849|gb|BI740494.1|BI740494
EST:     CCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67702479|gb|BJ962712.1|BJ962712
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|18367954|gb|BJ200038.1|BJ200038
EST:     GCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: GCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAG-TCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|7693560|gb|AW761666.1|AW761666
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67724821|gb|BJ975080.1|BJ975080
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67719874|gb|BJ970133.1|BJ970133
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGTTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|7286307|gb|AW598794.1|AW598794
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162207337|gb|FC383894.1|FC383894
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|15729857|gb|BI741522.1|BI741522
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162207338|gb|FC383895.1|FC383895
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67716306|gb|BJ966566.1|BJ966566
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|18372400|gb|BJ204002.1|BJ204002
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162240131|gb|FC418258.1|FC418258
EST:     GCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: GCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|67701885|gb|BJ962118.1|BJ962118
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162218716|gb|FC394266.1|FC394266
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|162262545|gb|FC439744.1|FC439744
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|37821368|gb|BJ579434.1|BJ579434
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGTGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|208382431|gb|DC927965.1|DC927965
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
EST: gi|100360736|gb|BY965874.1|BY965874
EST:     CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTG                         GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT
genomic: CGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 59

TGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttc ... tcttttgaagGTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgttttcacaagtctcataagaaagtcagaaggtgattagatgatcggtgctatttcttttcgttgagacttacctcactcataaattgtattcaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaaa