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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTCGTAAAGGCCACGGATATCTCCAGTTATTGGGGTGTGGTGCCAAAAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatctctctcatcctacgatggaatctagtggtgcagaccaccggatttctacgtatgctacacttagcccactagttgtgaatttctgtgagaacttgtaagtcttatcgcggggtgagcctactctgaatgtgtgcaattcttttgtacag

Basic information

species Physcomitrella patens
transcript PP1S183_11V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162232061|gb|FC407468.1|FC407468
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|100403550|gb|BY954982.1|BY954982
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|100356990|gb|BY983638.1|BY983638
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGAT
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGAT
EST: gi|162220974|gb|FC396159.1|FC396159
EST:     AGTCCAACACAAGGAGGACGGGACCTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCCATCGATT-AGAGAAGACC
genomic: AGTCCAACACAAGGAGGACGGGAC-TCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACC-ATCGATTTAGAGAAGACC
EST: gi|100388201|gb|BY951803.1|BY951803
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATNCCGATGTCACCATCGA
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGA
EST: gi|100352682|gb|BY945394.1|BY945394
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGNAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|162278227|gb|FC454462.1|FC454462
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|162280319|gb|FC456336.1|FC456336
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAG
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAG
EST: gi|100370806|gb|BY948525.1|BY948525
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGNAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|100384733|gb|BY950723.1|BY950723
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|208353256|gb|DC913568.1|DC913568
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGA
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGA
EST: gi|162241498|gb|FC415478.1|FC415478
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTT
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTT
EST: gi|100430350|gb|BY959825.1|BY959825
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|100382874|gb|BY986952.1|BY986952
EST:     AGTCCAACACAAGGAGGACGGGACTCCCTTGGAA-TGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AGTCCAACACAAGGAGGACGGGACTCC-TTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|100399415|gb|BY954360.1|BY954360
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACC-AC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|162270313|gb|FC447325.1|FC447325
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|162168864|gb|FC345338.1|FC345338
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|162275512|gb|FC451579.1|FC451579
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|162259694|gb|FC436518.1|FC436518
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|100385424|gb|BY969761.1|BY969761
EST:     AGTC-AACACA-GGNAGGACGGGACTCCTTGNAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGA
genomic: AGTCCAACACAAGG-AGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGA
EST: gi|100417956|gb|BY993267.1|BY993267
EST:     AGTCCAACANCA-GGAGGACGGGACTCCTTGNAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTC
genomic: AGTCCAACA-CAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTC
EST: gi|100388373|gb|BY951975.1|BY951975
EST:     AAGTCAAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGA
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGA
EST: gi|100444330|gb|BY982359.1|BY982359
EST:     AAGTCCAACACAGGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|100376718|gb|BY949431.1|BY949431
EST:     AGTCCNAACACA-GGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAA
genomic: AGTCC-AACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAA
EST: gi|100355861|gb|BY946075.1|BY946075
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGA-GACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|162228517|gb|FC404141.1|FC404141
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|100410681|gb|BY992216.1|BY992216
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|208347020|gb|DC909332.1|DC909332
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGA
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGA
EST: gi|100446774|gb|CJ971073.1|CJ971073
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATT
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATT
EST: gi|100389101|gb|BY952305.1|BY952305
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|162172123|gb|FC347986.1|FC347986
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|100352761|gb|BY945435.1|BY945435
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|18347854|gb|BJ179901.1|BJ179901
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTA
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTA
EST: gi|162199620|gb|FC373272.1|FC373272
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAG
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAG
EST: gi|100404260|gb|BY955336.1|BY955336
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGAACCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: gi|162197805|gb|FC373599.1|FC373599
EST:     AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG                         CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAATTCGTAAAGGCCACGGATATCTCCAGTTATTGGGGTGTGGTGCCAAAAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatctctctcatcctacgatggaatctagtggtgcagaccaccggatttctacgtatgctacacttagcccactagttgtgaatttctgtgagaacttgtaagtcttatcgcggggtgagcctactctgaatgtgtgcaattcttttgtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA