1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTACCATTGGAGGAAAAGATGAAAGTGATCCATGATAAGAATCACCGAGGTTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAGgtacttaaatctttctatttacattcaatgctctcgcccataaatcatcatttattgatagtaaacaaatttgctatctagtcgattgacttctcaaaatgtttttatctggaaaagataatgttgaagtatgatgactgaatgagtag
species | Physcomitrella patens |
transcript | PP1S180_67V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAG GTGATTCGAAGGAGGGTTACTACGTCGGGGTTCCAATCCCGGAAAGTGATCEST: gi|162220966|gb|FC396151.1|FC396151
genomic: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAGgtacttaaat ... gaatgagtagGTGATTCGAAGGAGGGTTACTACGTCGGGGTTCCAATCCCGGAAAGTGATC
EST: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAG GTGATTCGAAGGAGGGTTACTACGTCGGGGTTCCAATCCCGGAAAGTGATCEST: gi|100417046|gb|BY993217.1|BY993217
genomic: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAGgtacttaaat ... gaatgagtagGTGATTCGAAGGAGGGTTACTACGTCGGGGTTCCAATCCCGGAAAGTGATC
EST: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAG GTGATTCGAAGGAGGGTTACTACGTCGGGGTTCCAATCCCGGAAAGTGATCEST: gi|18345513|gb|BJ177556.1|BJ177556
genomic: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAGgtacttaaat ... gaatgagtagGTGATTCGAAGGAGGGTTACTACGTCGGGGTTCCAATCCCGGAAAGTGATC
EST: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAG GTGATTCGAAGGAGGGTTACCTACGTCGGGGTTCCAATCCCGGAAAGTGATEST: gi|18342360|gb|BJ174395.1|BJ174395
genomic: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAGgtacttaaat ... gaatgagtagGTGATTCGAAGGAGGGTTAC-TACGTCGGGGTTCCAATCCCGGAAAGTGAT
EST: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAG GTGATTCGAAGGAGGGTTACTACGTCGGGGTTCCAATCCCGGAAAGTGATC
genomic: TTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAGgtacttaaat ... gaatgagtagGTGATTCGAAGGAGGGTTACTACGTCGGGGTTCCAATCCCGGAAAGTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACCATTGGAGGAAAAGATGAAAGTGATCCATGATAAGAATCACCGAGGTTACACACCTTTTGAGGAGGAGATTCTGGACCCAGACACTCAATCGAAAGgtacttaaatctttctatttacattcaatgctctcgcccataaatcatcatttattgatagtaaacaaatttgctatctagtcgattgacttctcaaaatgtttttatctggaaaagataatgttgaagtatgatgactgaatgagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT