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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACGCCTATGGTATACCTCAATACAGTGGTGGAAGGATGCACCGCCAATATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcatacgatcttataaagtccctatttagtcccttgtttgcatcggaaatgtgtccgtagcttgatgtcacgctgtcagggttctaggactctc...

Basic information

species Physcomitrella patens
transcript PP1S17_59V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100391135|gb|BY953145.1|BY953145
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100439745|gb|BY962086.1|BY962086
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|208379092|gb|DC911617.1|DC911617
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|162268501|gb|FC444374.1|FC444374
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|162194984|gb|FC369049.1|FC369049
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100444286|gb|BY982315.1|BY982315
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|208351545|gb|DC909989.1|DC909989
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTANCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|208399641|gb|DC908822.1|DC908822
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100435912|gb|BY979286.1|BY979286
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|162263268|gb|FC438556.1|FC438556
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100411847|gb|BY992370.1|BY992370
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18368404|gb|BJ200489.1|BJ200489
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100389151|gb|BY952355.1|BY952355
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100450543|gb|CJ974316.1|CJ974316
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18331590|gb|BJ163601.1|BJ163601
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100441367|gb|BY962656.1|BY962656
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100388867|gb|BY988743.1|BY988743
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100364327|gb|BY984557.1|BY984557
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGGGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100364020|gb|BY966286.1|BY966286
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|67574856|gb|BJ947680.1|BJ947680
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100377797|gb|BY986401.1|BY986401
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18347503|gb|BJ179549.1|BJ179549
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|67574414|gb|BJ947238.1|BJ947238
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|22492370|gb|BU052293.1|BU052293
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18330883|gb|BJ162889.1|BJ162889
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGA
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGA
EST: gi|162237881|gb|FC412508.1|FC412508
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100448095|gb|CJ972394.1|CJ972394
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100427983|gb|BY959224.1|BY959224
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGGAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTAC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTAC
EST: gi|67577782|gb|BJ949949.1|BJ949949
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100362532|gb|BY947401.1|BY947401
EST:     ATTGCGGCCAAGTTGGAGATAATGCAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAAATTACTC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAA-TTACTC
EST: gi|100365388|gb|BY966573.1|BY966573
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100449753|gb|CJ973918.1|CJ973918
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCG
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCG
EST: gi|100364747|gb|BY947888.1|BY947888
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100442961|gb|BY963456.1|BY963456
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|162171169|gb|FC347783.1|FC347783
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100377280|gb|BY968449.1|BY968449
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100417127|gb|BY957181.1|BY957181
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|162150189|gb|FC326066.1|FC326066
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|208375523|gb|DC940521.1|DC940521
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100363746|gb|BY966540.1|BY966540
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|208379480|gb|DC911091.1|DC911091
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|208349136|gb|DC902170.1|DC902170
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|162154236|gb|FC330367.1|FC330367
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100352878|gb|BY945495.1|BY945495
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18372256|gb|BJ203858.1|BJ203858
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|67719719|gb|BJ969978.1|BJ969978
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGCTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18344603|gb|BJ176644.1|BJ176644
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100359503|gb|BY947020.1|BY947020
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|208378056|gb|DC906957.1|DC906957
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACT
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACT
EST: gi|100357205|gb|BY983746.1|BY983746
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTCGGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAG-CATGATTACTGATGCGGAGAATAAGGGTGCAATTACTC
EST: gi|100352459|gb|BY983219.1|BY983219
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|162277367|gb|FC453173.1|FC453173
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100441839|gb|BY981062.1|BY981062
EST:     TTGCGGCCCAGTTGGGAGATAATGGAGCCCTGNTGCAGTGNTAGGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGG
genomic: TTGCGGCCAAGTTGG-AGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGG
EST: gi|100447018|gb|CJ971317.1|CJ971317
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18343102|gb|BJ175140.1|BJ175140
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100410588|gb|BY992174.1|BY992174
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18375390|gb|BJ206968.1|BJ206968
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|67719948|gb|BJ970207.1|BJ970207
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18331703|gb|BJ163714.1|BJ163714
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100378820|gb|BY968705.1|BY968705
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18367034|gb|BJ199114.1|BJ199114
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100392796|gb|BY971888.1|BY971888
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18342527|gb|BJ174562.1|BJ174562
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100415638|gb|BY992932.1|BY992932
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|67709543|gb|BJ965359.1|BJ965359
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18356110|gb|BJ188169.1|BJ188169
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100438593|gb|BY980035.1|BY980035
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|162273732|gb|FC449455.1|FC449455
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100419486|gb|BY957596.1|BY957596
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|100361661|gb|BY984281.1|BY984281
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
EST: gi|18331774|gb|BJ163785.1|BJ163785
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGAT
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGAT
EST: gi|67719929|gb|BJ970188.1|BJ970188
EST:     ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAG                         GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 26

AAACGCCTATGGTATACCTCAATACAGTGGTGGAAGGATGCACCGCCAATATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcat ... taacgtgcagGATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACGCCTATGGTATACCTCAATACAGTGGTGGAAGGATGCACCGCCAATATTGCGGCCAAGTTGGAGATAATGGAGCCCTGTTGCAGTGTTAAGGATAGgttagtgcatacgatcttataaagtccctatttagtcccttgtttgcatcggaaatgtgtccgtagcttgatgtcacgctgtcagggttctaggactctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT